PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008598-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GRAS | ||||||||
Protein Properties | Length: 450aa MW: 49948.8 Da PI: 7.1963 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 40.5 | 4.3e-13 | 106 | 172 | 3 | 68 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppse 68 e Lle A+a++++++ + q+l++ l+e++sp+gd q+laayf++AL +r+++s+++ + l ++se SMil_00008598-RA_Salv 106 EILLETARAIADKNTGRLQQLMWMLNEMSSPYGDVDQKLAAYFLQALFSRMTDSGEQNRRNLiSASE 172 689**************************************************99887776633333 PP | |||||||
2 | GRAS | 157.4 | 1.3e-48 | 189 | 397 | 124 | 323 |
GRAS 124 QWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkpgEa 201 Wp+Ll+a+a+R+ +++p+lR+T+v+ + + ++ ++e+g+r++kfA+ +gvpf+ nv+++ +l++l+l +L++k+gEa SMil_00008598-RA_Salv 189 EWPTLLEAIATRSsDETPHLRLTAVVGGRGDgatagaaaVQRVMREIGSRMEKFARLMGVPFKLNVIHHAgDLSELNLAALDIKEGEA 276 5************7889********98665578889999999*************************7777***************** PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikv 285 la+n+v +l ++ ++ +rd++++ + +l+P++v++ve+ead+n + +F+++f e+l+++ + f++le+++pr+s+er ++ SMil_00008598-RA_Salv 277 LAINCVGSLRSVR----ATGGNRDQLISNFGKLRPRIVTIVEEEADLNVGddgfEFVRGFQECLRWFRVYFEALEESFPRASNERLVL 360 *********9998....44445778*********************987777889********************************* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaG 323 Er+ gr++v++vac e++er+ t+++W++r++ G SMil_00008598-RA_Salv 361 ERA-AGRAVVDLVACPPHESVERRDTAARWSQRMHGGG 397 ***.******************************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.269 | 11 | 428 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-10 | 106 | 172 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.4E-46 | 189 | 397 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MDTLFRLVSL QSEQSINSSR TSSSSRSQNP YHQEEECLNY FMDEEDFSSS SSSKHYHHHL 60 QVSNTPPTTT PTHHAYDQSS YSTAAPHDVS MEFPAAFSGQ NKWASEILLE TARAIADKNT 120 GRLQQLMWML NEMSSPYGDV DQKLAAYFLQ ALFSRMTDSG EQNRRNLISA SEKAASFDAT 180 RETVLKFQEW PTLLEAIATR SSDETPHLRL TAVVGGRGDG ATAGAAAVQR VMREIGSRME 240 KFARLMGVPF KLNVIHHAGD LSELNLAALD IKEGEALAIN CVGSLRSVRA TGGNRDQLIS 300 NFGKLRPRIV TIVEEEADLN VGDDGFEFVR GFQECLRWFR VYFEALEESF PRASNERLVL 360 ERAAGRAVVD LVACPPHESV ERRDTAARWS QRMHGGGSGR GRSVRRARIP PEYSFRGGSS 420 RWCGLVRGNP RDRNSAVCSR AVHGCGVGNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 1e-127 | 97 | 399 | 26 | 368 | Protein SHORT-ROOT |
5b3h_E | 1e-127 | 97 | 399 | 26 | 368 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022856789.1 | 0.0 | protein SHORT-ROOT-like | ||||
Swissprot | Q9SZF7 | 1e-133 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A291I303 | 0.0 | A0A291I303_SALMI; GRAS1 transcription factor | ||||
STRING | VIT_07s0129g00030.t01 | 1e-173 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2031 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 1e-125 | GRAS family protein |