PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008579-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 28298.9 Da PI: 9.8947 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1.1e-14 | 86 | 130 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky SMil_00008579-RA_Salv 86 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 130 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.437 | 1 | 26 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-13 | 77 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.728 | 79 | 135 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.16E-17 | 80 | 134 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-17 | 82 | 134 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-13 | 83 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-13 | 86 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.13E-12 | 86 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
LAKVAAMVPG KTVGDVIRQY KELEDDVSSI EAGLIPVPGY TTSSPFTLEW GSAAHGYDGF 60 KHSFAAGRKA PPPGRPSEQE RKKGVPWTEE EHKLFLMGLK KYGKGDWRNI SRNFVITRTP 120 TQVASHAQKY FIRQLSGGKD KRRASIHDIT TVNLNDHQAP SPERKKQPSP EQPSILAPQS 180 EKLPNYQWSQ ASNEAVMGFS SLCHGNMFSS PPYGIASFGH KMHGHHLQRG VVHDAFMGSQ 240 NAVFQMQPEL HYPNA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00568 | DAP | Transfer from AT5G58900 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080854.1 | 1e-139 | transcription factor DIVARICATA isoform X1 | ||||
Refseq | XP_020550520.1 | 1e-139 | transcription factor DIVARICATA isoform X2 | ||||
Swissprot | Q8S9H7 | 1e-132 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A4D8YRZ7 | 1e-168 | A0A4D8YRZ7_SALSN; Uncharacterized protein | ||||
STRING | EOY33801 | 1e-120 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 5e-88 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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