PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00008567-RA_Salv | ||||||||
Common Name | MYB5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 219aa MW: 24400.2 Da PI: 9.937 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.3 | 1.7e-18 | 32 | 77 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v ++G+++W++I++++ gR++k+c++rw + SMil_00008567-RA_Salv 32 KGPWSAEEDKILTRLVDRYGPRNWSLISKYIK-GRSGKSCRLRWCNQ 77 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 86 | 128 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ SMil_00008567-RA_Salv 86 PFSAAEDDAILAAHHKYGNR-WATIARLLP-GRTDNAVKNHWNST 128 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.83 | 27 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.7E-31 | 30 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-16 | 31 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-18 | 32 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-24 | 33 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-14 | 34 | 76 | No hit | No description |
SMART | SM00717 | 1.2E-15 | 83 | 131 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.218 | 84 | 133 | IPR017930 | Myb domain |
CDD | cd00167 | 2.66E-12 | 86 | 129 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 86 | 132 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-14 | 86 | 128 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MDLLNRCSSV SSSSSESSSD SSSQRKNGER IKGPWSAEED KILTRLVDRY GPRNWSLISK 60 YIKGRSGKSC RLRWCNQLSP AVEHRPFSAA EDDAILAAHH KYGNRWATIA RLLPGRTDNA 120 VKNHWNSTLK RRYQMQQRRQ GGGDQSLHRG RGESVECDPM TALSLAPPGI GAAAAAAAEE 180 RPSEDLPAGF WDAMRNVIAR EVRDYVTTSF QDTSSGFRF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-41 | 29 | 132 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-41 | 27 | 132 | 53 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-41 | 27 | 132 | 53 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF059359 | 0.0 | KF059359.1 Salvia miltiorrhiza MYB-related transcription factor (MYB5) mRNA, complete cds. | |||
GenBank | KF059469 | 0.0 | KF059469.1 Salvia miltiorrhiza MYB-related transcription factor (MYB5) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083803.1 | 1e-100 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 4e-56 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A059PRQ2 | 1e-161 | A0A059PRQ2_SALMI; MYB-related transcription factor | ||||
STRING | XP_004169452.1 | 1e-90 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7950 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 4e-56 | myb domain protein 73 |
Publications ? help Back to Top | |||
---|---|---|---|
|