PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008487-RA_Salv
Common NameMYB103
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 291aa    MW: 32784.5 Da    PI: 6.7422
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008487-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-164893147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg W + Ed +l+d+v+++G+ +W++Ia+++  gR++k+c++rw++ 
  SMil_00008487-RA_Salv 48 RGHWRPAEDAKLKDLVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 93
                           899*****************************.***********996 PP
2Myb_DNA-binding56.94.7e-18100143146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  SMil_00008487-RA_Salv 100 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 143
                            678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8964394IPR017930Myb domain
SMARTSM007179.0E-144796IPR001005SANT/Myb domain
SuperFamilySSF466895.86E-2848141IPR009057Homeodomain-like
PfamPF002491.1E-154893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2649101IPR009057Homeodomain-like
CDDcd001671.71E-125192No hitNo description
PROSITE profilePS5129427.28895149IPR017930Myb domain
SMARTSM007172.1E-1499147IPR001005SANT/Myb domain
PfamPF002491.6E-14100142IPR001005SANT/Myb domain
CDDcd001673.48E-11102142No hitNo description
Gene3DG3DSA:1.10.10.604.9E-21102148IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVYADDWGFP FSDEANNSEG IDLNASLNDE DPDQDSHVHG SRSKVCARGH WRPAEDAKLK  60
DLVALYGPQN WNLIAEKLDG RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMAAHRLYGN  120
KWAMIARLFP GRTDNAVKNH WHVIMARKYR EQSSAYRRRK MGQFVFKRIE DDNAAAAAAA  180
GVFCGGSADL AGAGVWTPQA SLAFYPGPSY SNEMMSVFNH NKSWEETNTY SYPYQQHYTP  240
AATATATATP LLYQHSLYHF PSEAASVHAE PKVDERMAPP FIDFLGVGGS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32471486107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594570.0KF059457.1 Salvia miltiorrhiza MYB-related transcription factor (MYB103) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075638.11e-125myb-like protein Q
SwissprotQ9SEZ48e-78MY105_ARATH; Transcription factor MYB105
TrEMBLA0A059PSU60.0A0A059PSU6_SALMI; MYB-related transcription factor
STRINGMigut.E00083.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-78myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]