PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00008467-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

BES1

Protein Properties

Length: 699aa MW: 78649.9 Da PI: 5.897

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00008467-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	141.7	7e-44	48	188	1	133
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaags 84 gg++r ++++E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ ++++p+ ++++a++ SMil_00008467-RA_Salv 48 GGARRCRPQEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsraQSTRPTgGAQNTAVT 135 6899***************************************************************9777888888944444444 PP DUF822 85 sas....aspesslqsslkssalaspvesysaspksssfpspssldsislasa 133 s+s a+p+s+++++ s +s v+ +s+ +k + +p +s +d s++ + SMil_00008467-RA_Salv 136 SSSsqmpAQPTSPTSLRGISPGYKSTVDYSSSHLKGVFVPTSSPYDVSSSTRS 188 4443456677788788899999*********************99877644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.6E-38	50	184	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.76E-169	230	432	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	2.2E-189	233	694	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.4E-96	239	681	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.7E-40	270	284	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.7E-40	291	309	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.7E-40	313	334	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	317	325	IPR018238	Glycoside hydrolase, family 14, conserved site
SuperFamily	SSF51445	2.76E-169	459	694	IPR017853	Glycoside hydrolase superfamily
PRINTS	PR00750	3.7E-40	556	567	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.7E-40	574	597	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.7E-40	614	636	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
LTRLMAAEMQ RFGASEEDDD EMGMDVKEED DDDDEDEEKN MVTPNMVGGA RRCRPQEEKE 60 RTKLRERQRR AITAKILAGL RRHGNYNLRV RADINDVIAA LAREAGWVVL PDGTTFPSRA 120 QSTRPTGGAQ NTAVTSSSSQ MPAQPTSPTS LRGISPGYKS TVDYSSSHLK GVFVPTSSPY 180 DVSSSTRSQA SAMIGDGGEL PNDPLLGGSI DSVDTTQVVD MPSKLQERDF SGTSYVPVYA 240 MLPLGVINMK CELVDPDGLV KQLKILKSMH VDGIMVDCWW GIVEAHAPQE YNWNGYRRLF 300 QMVKELKMKL QVVMSFHECG GNVGDDVCIP LPHWVAEIGR NNPDIFFTDR AGRRDPECLS 360 WGADKERVLR GRTAIEVYFD YMRSFRVEFD EFFEDGVISM IVVGLGPCGE LRYPCNPVKH 420 GWRYPGIGEF QGRWRGCGCS ENVYRKEKHL VRCWTEVCYD QYMLKSLRKA AEIRGHSFWA 480 RGPENAGSYN SLPHETGFFC DGGDYDGYYG RFFLSWYSQV LVEHGDKVLS LAKLAFEGTQ 540 IAAKLSGMHW WYKTASHAAE LTAGFYNSSN RDGYAAIMAM LKRHGATLCL TCSEKSMMNQ 600 NTDLSESLAD PEGLLWQVLN AAWDASISVA SENSFACNGR ERFSYLLEKA KPISDPDRRH 660 FSSFTYLRLS PLLMERPNLI EFERFVKKMH GEAVLEYQT

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

LTRLMAAEMQ RFGASEEDDD EMGMDVKEED DDDDEDEEKN MVTPNMVGGA RRCRPQEEKE  60
RTKLRERQRR AITAKILAGL RRHGNYNLRV RADINDVIAA LAREAGWVVL PDGTTFPSRA  120
QSTRPTGGAQ NTAVTSSSSQ MPAQPTSPTS LRGISPGYKS TVDYSSSHLK GVFVPTSSPY  180
DVSSSTRSQA SAMIGDGGEL PNDPLLGGSI DSVDTTQVVD MPSKLQERDF SGTSYVPVYA  240
MLPLGVINMK CELVDPDGLV KQLKILKSMH VDGIMVDCWW GIVEAHAPQE YNWNGYRRLF  300
QMVKELKMKL QVVMSFHECG GNVGDDVCIP LPHWVAEIGR NNPDIFFTDR AGRRDPECLS  360
WGADKERVLR GRTAIEVYFD YMRSFRVEFD EFFEDGVISM IVVGLGPCGE LRYPCNPVKH  420
GWRYPGIGEF QGRWRGCGCS ENVYRKEKHL VRCWTEVCYD QYMLKSLRKA AEIRGHSFWA  480
RGPENAGSYN SLPHETGFFC DGGDYDGYYG RFFLSWYSQV LVEHGDKVLS LAKLAFEGTQ  540
IAAKLSGMHW WYKTASHAAE LTAGFYNSSN RDGYAAIMAM LKRHGATLCL TCSEKSMMNQ  600
NTDLSESLAD PEGLLWQVLN AAWDASISVA SENSFACNGR ERFSYLLEKA KPISDPDRRH  660
FSSFTYLRLS PLLMERPNLI EFERFVKKMH GEAVLEYQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1q6e_A	1e-140	234	692	10	444	beta-amylase
1q6f_A	1e-140	234	692	10	444	beta-amylase
1q6g_A	1e-140	234	692	10	444	beta-amylase
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093139.1	0.0	beta-amylase 7
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A4D9AVA9	0.0	A0A4D9AVA9_SALSN; Uncharacterized protein
STRING	Migut.N01443.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1607	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]