PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008421-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family G2-like
Protein Properties Length: 512aa    MW: 57706.6 Da    PI: 5.3793
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008421-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-32199253155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            k+r+rWt++LH+rFve+v++LGG++kAtPk++l+lm+ +gLt+ hvkSHLQkYR 
  SMil_00008421-RA_Salv 199 KTRIRWTQDLHDRFVECVNRLGGPDKATPKQVLKLMDTEGLTIFHVKSHLQKYRN 253
                            68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.226196256IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-29197254IPR009057Homeodomain-like
SuperFamilySSF466892.33E-16197253IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-24199254IPR006447Myb domain, plants
PfamPF002491.3E-7203252IPR001005SANT/Myb domain
PfamPF143791.3E-19285332IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MKKIQHNYGY PSEFVSQLPN YFPQNHTPQM GFSNQPTQQN ENPSATIIGR IGSPAAAFCA  60
AEIAMGLSQY DLPESCSQQS KNPRPFHQPL FQESPARNEA DYHTTTQHYV VTTSEGSYRN  120
HLFTNLSERE QILHLKNKLL GDLDDSNRRS PSAPFDSNHD LEVSHNPYAP HLAQMKQFGR  180
PPTPINSSSS FAAAASSNKT RIRWTQDLHD RFVECVNRLG GPDKATPKQV LKLMDTEGLT  240
IFHVKSHLQK YRNAKYSPES VEATGKAEKK TNTNNAAEID IKTGMQLKEA LQMQLDVQRR  300
LHEQLEIQRN LQLRIEEQNK QLKMMFDQQQ MTTQNLTETR NNKCLNPNSL STTVDSDPEI  360
FVLDGSDDDM GAIGRLVVGG SAPCRMIEGE EVGSDLCLFK RDLSGGEDES FVPDSGRERE  420
IERGGGAAAD DEENVAAWCG GWLGGQKVCW ILTSKLDKKE LSVYTDEYCL DRVSVEIIEM  480
MKQTSLVCPL VLEEFSEMIR NWVEIRSTWS LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-22199256259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-22199256259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-22199256259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-22199256259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-22199256259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-22199256259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-22199256259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-22199256259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075159.11e-135myb family transcription factor PHL5 isoform X1
TrEMBLA0A4D9BFT70.0A0A4D9BFT7_SALSN; Two-component response regulator ARR-B family
STRINGMigut.J01825.1.p1e-112(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-64G2-like family protein