PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008405-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 434aa    MW: 47651.5 Da    PI: 8.1464
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008405-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.8e-125984126
                           --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                           ++++ C +++rtG C yG++C+F+H+
  SMil_00008405-RA_Salv 59 PGEPDCIYYLRTGSCGYGSNCRFNHP 84
                           5789*********************8 PP
2zf-CCCH34.72.9e-11105129327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            ++ C ++++tGtCkyG++C+++H++
  SMil_00008405-RA_Salv 105 QPDCGHYLKTGTCKYGSTCRYHHPK 129
                            789********************96 PP
3zf-CCCH34.53.5e-11149172427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            ++C+f++rtG CkyG  CkF+H++
  SMil_00008405-RA_Salv 149 KPCPFYMRTGLCKYGYACKFHHPQ 172
                            69********************97 PP
4zf-CCCH36.96e-12270295227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++Cr+f++ G CkyG+ Ck++H++
  SMil_00008405-RA_Salv 270 DQPECRYFMEHGSCKYGSECKYHHPR 295
                            689*********************96 PP
5zf-CCCH33.85.6e-11315341127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++ C++++ +G CkyG++C+F H++
  SMil_00008405-RA_Salv 315 PGQPVCSYYSLYGLCKYGPTCRFDHPM 341
                            5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.7E-65885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4465886IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-96084IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-66386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-56483IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765102130IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4102129IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6107130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4108129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-7144174IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-5145172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084145173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-5149171IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-9149172IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5268295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.314268296IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9270295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-7271299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-6274297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6313340IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-7314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352314342IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-8316341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4319339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
LSTQCWCKFL EKSMPGNRKF SRNGSTSDRV EEAMRRLKVE ESDDNGGAGD ELGSYPDRPG  60
EPDCIYYLRT GSCGYGSNCR FNHPSSAGQV YGVKTSSELP ERAGQPDCGH YLKTGTCKYG  120
STCRYHHPKD RQADFLLNML GLPMRQDAKP CPFYMRTGLC KYGYACKFHH PQPTLAAANV  180
LPVVGPVYGS GGSAVVPSSG ASSASVASVS QHPYQRQLIL LALSKFHRAT CPYFYLHHKD  240
GTHICPLSVT SVLTGPVSNG QLSYLPERPD QPECRYFMEH GSCKYGSECK YHHPREKLSQ  300
LVSTSLGPLG LPLRPGQPVC SYYSLYGLCK YGPTCRFDHP MDGHNYAYSL SVPPPAFAYS  360
SPAPYQRTTS LMPVADASPT KSSKLSDWIK KEATVSDKHL QNSNTKSVGE SLDQSDSLPH  420
SSKASSEVHH DESD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085489.10.0zinc finger CCCH domain-containing protein 33 isoform X2
TrEMBLA0A4D8XVR10.0A0A4D8XVR1_SALSN; Uncharacterized protein
STRINGMigut.H01247.1.p1e-163(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.24e-76C3H family protein