PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008373-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 399aa    MW: 44807.6 Da    PI: 4.4138
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008373-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-20105154255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +++GVr+++ +g+W+AeIrdp++   + r +lg+++taeeAa  +++a+ kl+g
  SMil_00008373-RA_Salv 105 KFRGVRRRP-WGKWAAEIRDPCK---KVRLWLGTYDTAEEAAMVYDNAAIKLRG 154
                            89*******.**********843...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-29104162IPR001471AP2/ERF domain
PfamPF008476.5E-13105154IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-22105163IPR016177DNA-binding domain
PROSITE profilePS5103224.039105162IPR001471AP2/ERF domain
SMARTSM003805.5E-38105168IPR001471AP2/ERF domain
CDDcd000185.01E-33105163No hitNo description
PRINTSPR003676.3E-10106117IPR001471AP2/ERF domain
PRINTSPR003676.3E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDVANLRPLK HTVHRKITKK FVEPPHEPRA IRISVTDPDA TDSSSDEEGE LFPRRRVKKF  60
VSEIRMETAR NNPENSRKRS TATLHPKPKQ VSSKAAALAE GECRKFRGVR RRPWGKWAAE  120
IRDPCKKVRL WLGTYDTAEE AAMVYDNAAI KLRGPDALTN FAVPTRKDEL QELNVLSGDD  180
SCDDFRNRSS PASVLSFRSS LTSAEESSPS ASKTEDEVCG EIKGSAVEYA VCSAASEECR  240
AGMPDYSPDG LPMTTDFLDD FFNFEAQDQT LLFDQQNCSD NARTGDNFLI DDVLGFGDFN  300
DSALDEFDFG ELKCEFPGLF KDSFQDEFPQ RHSFGDVKCS IQEEFVAVQN KAELTDFYDS  360
SLQEFSGDFD VLIPEFNLVR AEEDFYQESM FVDGAVAVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-19104161159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076033.15e-86ethylene-responsive transcription factor CRF4-like
RefseqXP_011084481.12e-86ethylene-responsive transcription factor CRF4-like
TrEMBLA0A4D9BPW81e-144A0A4D9BPW8_SALSN; Uncharacterized protein
STRINGXP_009791967.14e-80(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-56cytokinin response factor 4