PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008373-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 399aa MW: 44807.6 Da PI: 4.4138 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.7e-20 | 105 | 154 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp++ + r +lg+++taeeAa +++a+ kl+g SMil_00008373-RA_Salv 105 KFRGVRRRP-WGKWAAEIRDPCK---KVRLWLGTYDTAEEAAMVYDNAAIKLRG 154 89*******.**********843...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-29 | 104 | 162 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-13 | 105 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-22 | 105 | 163 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.039 | 105 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-38 | 105 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.01E-33 | 105 | 163 | No hit | No description |
PRINTS | PR00367 | 6.3E-10 | 106 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-10 | 128 | 144 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MDVANLRPLK HTVHRKITKK FVEPPHEPRA IRISVTDPDA TDSSSDEEGE LFPRRRVKKF 60 VSEIRMETAR NNPENSRKRS TATLHPKPKQ VSSKAAALAE GECRKFRGVR RRPWGKWAAE 120 IRDPCKKVRL WLGTYDTAEE AAMVYDNAAI KLRGPDALTN FAVPTRKDEL QELNVLSGDD 180 SCDDFRNRSS PASVLSFRSS LTSAEESSPS ASKTEDEVCG EIKGSAVEYA VCSAASEECR 240 AGMPDYSPDG LPMTTDFLDD FFNFEAQDQT LLFDQQNCSD NARTGDNFLI DDVLGFGDFN 300 DSALDEFDFG ELKCEFPGLF KDSFQDEFPQ RHSFGDVKCS IQEEFVAVQN KAELTDFYDS 360 SLQEFSGDFD VLIPEFNLVR AEEDFYQESM FVDGAVAVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-19 | 104 | 161 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076033.1 | 5e-86 | ethylene-responsive transcription factor CRF4-like | ||||
Refseq | XP_011084481.1 | 2e-86 | ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A4D9BPW8 | 1e-144 | A0A4D9BPW8_SALSN; Uncharacterized protein | ||||
STRING | XP_009791967.1 | 4e-80 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 5e-56 | cytokinin response factor 4 |