PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008358-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9239.12 Da PI: 9.8056 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.4e-08 | 10 | 54 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W+ +++ a +++ + +W+ Iar +g g+++ +++ ++ SMil_00008358-RA_Salv 10 SWSSKQNKQFEAALAKFDRDtpdRWHNIARAVGGGKSADEVRRHY 54 7*****************99************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.284 | 3 | 58 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.3E-6 | 7 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.33E-11 | 9 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-5 | 10 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00157 | 17 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MASSSMTSSS WSSKQNKQFE AALAKFDRDT PDRWHNIARA VGGGKSADEV RRHYEALERD 60 ISSIENDQVP IPNYRAARNA RT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-25 | 1 | 75 | 1 | 74 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083673.1 | 4e-37 | protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 6e-27 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A4D8XUF9 | 3e-40 | A0A4D8XUF9_SALSN; Uncharacterized protein | ||||
STRING | Migut.N00487.1.p | 3e-33 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 5e-27 | RAD-like 1 |
Publications ? help Back to Top | |||
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