PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00008224-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 22645.3 Da PI: 8.2907 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.4e-16 | 43 | 86 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ SMil_00008224-RA_Salv 43 GHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 86 667******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.553 | 18 | 36 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-10 | 22 | 48 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.84E-22 | 22 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.637 | 37 | 91 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-14 | 41 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 42 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.03E-10 | 46 | 87 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-20 | 49 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MVVHVQQKSA LKVERTNADR LNRSGKSCRL RWVNYLRPGL KKGHITPQEE GIIIELHALW 60 GNKWSTIARY LPGRTDNEIK NYWRTHFKKR KSASSHESRQ EKQEQEEEAR IDDNKIGKVE 120 DEQGKKVCRS SDQLMLATAH EDCNSTWCWS DFDNCFGLWD MDDQNGCSKM AIHSQPNIAR 180 GGGGGGASGG DAMCSGGYIF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-17 | 23 | 90 | 40 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF059368 | 0.0 | KF059368.1 Salvia miltiorrhiza MYB-related transcription factor (MYB14) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099170.1 | 9e-56 | myb-related protein 305 | ||||
TrEMBL | A0A059PRE0 | 1e-112 | A0A059PRE0_SALMI; MYB-related transcription factor | ||||
STRING | PGSC0003DMT400003479 | 4e-49 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30210.1 | 4e-45 | myb domain protein 121 |