PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008214-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C3H | ||||||||
Protein Properties | Length: 295aa MW: 30204.2 Da PI: 10.2523 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.6 | 2.4e-09 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ f G Ck+Gd+C+FaHg+ SMil_00008214-RA_Salv 97 KTKVCNKFKSEGGCKFGDKCHFAHGE 122 899*********************96 PP | |||||||
2 | zf-CCCH | 32.7 | 1.2e-10 | 263 | 287 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +G+rC+FaHg SMil_00008214-RA_Salv 263 FKTKLCENFTK-GSCTFGERCHFAHG 287 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 58 | 27 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 43 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.357 | 47 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.69 | 47 | 57 | No hit | No description |
Pfam | PF08352 | 0.42 | 75 | 121 | IPR013563 | Oligopeptide/dipeptide ABC transporter, C-terminal |
SMART | SM00356 | 8.7E-6 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-15 | 95 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-8 | 95 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 5.84E-16 | 162 | 239 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.1E-16 | 168 | 237 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.3E-13 | 168 | 238 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.927 | 169 | 233 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.2E-12 | 171 | 235 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.86E-15 | 171 | 233 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-15 | 259 | 293 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-8 | 261 | 292 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-7 | 262 | 288 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.183 | 262 | 289 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-8 | 263 | 287 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015833 | Biological Process | peptide transport | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDTRKRGRAE FANGGGFKKS KPGVIISFKK EKGKKPLAGT NANTSGCPFG ENCHFLHFVP 60 GGYNAVAQMM NLAPAPTPRA GGGPMHAQNG SAPGAVKTKV CNKFKSEGGC KFGDKCHFAH 120 GEWELGKPIA PSHEDPRGGG GGGGAMPGRF GGGRMEPHVP GPAASFGASA TAKISVDASL 180 AGAVIGKGGV NSKQICRQTG AKLSIRDHET DPNLRNIELE GTFEQIQQAS AMVRELIVSI 240 GPGGGPGKGF GGGGGPASTG SNFKTKLCEN FTKGSCTFGE RCHFAHGAAE LRKTG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078827.1 | 1e-152 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 3e-95 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A4D9AMA2 | 1e-143 | A0A4D9AMA2_SALSN; Uncharacterized protein | ||||
STRING | cassava4.1_013023m | 1e-136 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 3e-59 | C3H family protein |