PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008167-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 266aa    MW: 29647.6 Da    PI: 4.8806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008167-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-1879127355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa a+++ ++k++g
  SMil_00008167-RA_Salv  79 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNTAEEAAHAYDREARKIRG 127
                            9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.47278135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-3278136IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-2278136IPR016177DNA-binding domain
SMARTSM003805.6E-3778141IPR001471AP2/ERF domain
CDDcd000188.31E-3179136No hitNo description
PfamPF008478.9E-1279127IPR001471AP2/ERF domain
PRINTSPR003674.3E-117990IPR001471AP2/ERF domain
PRINTSPR003674.3E-11101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
LEDISPKMCG GAILAGLIPS RHVSSTDILP TAADFWPAAF SYSDQNDAPP LKRSRSSAGD  60
EHVSKNNGPK SKKQRKNLYR GIRQRPWGKW AAEIRDPRKG VRVWLGTYNT AEEAAHAYDR  120
EARKIRGKKA KVNFPNEDDD YSCNYNPSPN FEYYSEFNQA GLGICDYVET FYAVNDAADA  180
KPEANESGGK DAVIGPAAEA AKEEKHAAAE NDEVQKLSEE LMAYENYMKF YQIPYYDGQS  240
QSPPPPSNPP PDTVELWSFD EVSGEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2179135663ATERF1
3gcc_A5e-2179135663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079624.11e-110ethylene-responsive transcription factor ERF071
TrEMBLA0A4D9AL191e-125A0A4D9AL19_SALSN; EREBP-like factor
STRINGMigut.D00130.1.p8e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-42ERF family protein