PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008031-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 183aa    MW: 19469.7 Da    PI: 4.5367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008031-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-192071155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr +k++g+Wv+eIr+p     r   r++lg+f t+e+Aa+a++ a+++l+g
  SMil_00008031-RA_Salv 20 PVYRGVRKRKSSGKWVSEIREP-----RtpNRIWLGTFPTPEMAAAAYDVAALALKG 71
                           68*******************9.....4478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-132071IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-292181IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-202181IPR016177DNA-binding domain
PROSITE profilePS5103222.3392179IPR001471AP2/ERF domain
SMARTSM003802.2E-312185IPR001471AP2/ERF domain
CDDcd000184.43E-182281No hitNo description
PRINTSPR003673.0E-82233IPR001471AP2/ERF domain
PRINTSPR003673.0E-86181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSQSAAGSST PVSPPSGPHP VYRGVRKRKS SGKWVSEIRE PRTPNRIWLG TFPTPEMAAA  60
AYDVAALALK GSQAELNFPN SAAYLPIPAS TSPRDIQAAA ASAAAAAGAA RDRTNAEAAA  120
VEQPQFPAGS NEFVDEDLIF DMPNVLMNMA HGMMISPPRL GFAAVDDDED EYLGDDHNLW  180
NYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1319801273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022846449.13e-70ethylene-responsive transcription factor ERF024
SwissprotQ9SJR04e-58ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A4D8ZZX42e-73A0A4D8ZZX4_SALSN; EREBP-like factor
STRINGcassava4.1_031718m2e-68(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.16e-42ERF family protein