PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008024-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 305aa    MW: 35362.1 Da    PI: 7.1535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008024-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-1871121255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +ykGVr+++ +g+++AeIr p +    +r +lg++ t+eeAa a+++a+ kl+g
  SMil_00008024-RA_Salv  71 RYKGVRRRP-WGKFAAEIRNPDKK--GARLWLGTYETPEEAAVAYDRAAFKLRG 121
                            8********.**********8553..4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.29E-3070131No hitNo description
SuperFamilySSF541711.44E-2271130IPR016177DNA-binding domain
SMARTSM003803.4E-3671135IPR001471AP2/ERF domain
PfamPF008473.1E-1371121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3071130IPR001471AP2/ERF domain
PROSITE profilePS5103224.26371129IPR001471AP2/ERF domain
PRINTSPR003673.1E-127283IPR001471AP2/ERF domain
PRINTSPR003673.1E-12111131IPR001471AP2/ERF domain
PfamPF139661.8E-6160201IPR026960Reverse transcriptase zinc-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEQTIESDFD GDHWLHSIQN YLLSDSDFAL DDNASPISDD DVSQMVDELL RGEVAESSPS  60
PSPSPPAEWK RYKGVRRRPW GKFAAEIRNP DKKGARLWLG TYETPEEAAV AYDRAAFKLR  120
GSRARVNFPH LIGSGIPEPT RVTKRKHADF KKMDSRETFC DNLSKRNIPL GDVEIMCNAC  180
CQEKESADHL FLSCPKTEMI WNEIQKWIGF YTARPDSIEA HFDSFTHLGR GKKSKKLLEA  240
LWACTTWLIW KGRNESRFEN KNWQVEKMMG EIKARLWSWN KVFNLVDVEI NFRSWFSYTI  300
SPFLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2767135169ATERF1
3gcc_A3e-2767135169ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9AC505e-74A0A4D9AC50_SALSN; Ethylene-responsive transcription factor 2
STRINGSolyc01g090310.2.18e-48(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-37ethylene-responsive element binding factor 13