PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007993-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 540aa    MW: 59014.3 Da    PI: 8.1163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007993-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-192978255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  SMil_00007993-RA_Salv 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAAMAYDEAARRLYG 78
                           69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.87E-312888No hitNo description
PfamPF008471.0E-122978IPR001471AP2/ERF domain
SMARTSM003808.5E-372992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-302987IPR001471AP2/ERF domain
PROSITE profilePS5103222.6952986IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-212987IPR016177DNA-binding domain
PRINTSPR003674.4E-103041IPR001471AP2/ERF domain
PRINTSPR003674.4E-105268IPR001471AP2/ERF domain
PfamPF049702.7E-26308440IPR007053LRAT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MENCRKSPLK PWKKGPARGK GGPQNATCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFS  60
TAEEAAMAYD EAARRLYGPE AYLNLPHLRS NFNPLSKSQK FKWFPSSNFN SKLPSTGLLN  120
LNAQPSVHVI HQRLQELKKS GVLGQDYSSS SSSSDPKNDV HILSEEPRLE IPEATEKDTE  180
FSSQSKVITS EDKPQIDLNE FLQQLGVLKG EGHQPCESDN TSKNFTEIES LSFKDDEEDG  240
FVECLAREEG MDVGEGYYTD LSQNQKKFIA SLTSSTATWR RVSAAVRAAA VAAAASSCVG  300
RGKRGDGGIY IGGDKVVHFT QHQNLSSGDS TSFRFSSSIT DVTADCLDFP DCGFRKHTSG  360
VVMSCLNCFL GGGSLYRFEY GVSPVALVTR LRSGTCTTAK SDPPEEVIHR AMHLLQNGFG  420
KYDVFSNNCE DFALYCKTEL VVCPQRGSGG SGQVSSVVGV PVAAILSLPL KMFVSNPVVL  480
GATAVVSYNL NRYASDVGVR DDVVKVNVEG VAAFHGKLLA EVDGGADVAG DRRKKRRRNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1531537RRKKRRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.15e-68ERF family protein