PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007932-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 340aa    MW: 36936 Da    PI: 7.7931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007932-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-174393256
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                           +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g+
  SMil_00007932-RA_Salv 43 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRGA 93
                           59*******.**********93....35999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-114392IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2143100IPR016177DNA-binding domain
CDDcd000182.30E-294399No hitNo description
SMARTSM003807.2E-3343106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-304399IPR001471AP2/ERF domain
PROSITE profilePS5103222.10243100IPR001471AP2/ERF domain
PRINTSPR003671.8E-94455IPR001471AP2/ERF domain
PRINTSPR003671.8E-96682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEEAMRRLNG APDPPAAPPK RCATNKRSLK DGAAAPPPAG SMRYRGVRRR PWGRYAAEIR  60
DPQSKERRWL GTFDTAEEAA CAYDCAARAM RGAKARTNFV YPTSPTHPAA DNLIPPFHYS  120
KSPQPSILGA RHLAPSSTFA NPNLDLTGSS FRSNNSLNML LLRDYLNTSN SKYSDACSFN  180
FPNEQMPLSF FSNSSSSPSP CSSSSPLQPI IAPEAAFKHS DDTVPTSTDS TDFFASERSD  240
SGLLQEVIHG FFPKVKTEPP SSPPPVINEA GAKNEFLGFP VDNQRFFTQF NSGGNHCYGG  300
EASSNSIYCS DFQAVSSGIF GDIFHYQEAL SLVAARVPNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1943991471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086646.11e-127ethylene-responsive transcription factor ESR2-like
TrEMBLA0A2G9GV381e-129A0A2G9GV38_9LAMI; Uncharacterized protein
STRINGMigut.K00605.1.p1e-109(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.18e-17DORNROSCHEN-like