PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007835-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 271aa    MW: 30401.1 Da    PI: 6.1026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007835-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-1283126855
                            HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             Er RR+++++ f++L +l+P++    +++ +K++i+ +Av +Ik++q
  SMil_00007835-RA_Salv  83 TERERRKKMRNMFATLHSLIPHL----HPRADKSSIVDEAVIHIKNMQ 126
                            7*********************9....8******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.5775125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-1477137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1380138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.75E-1280130No hitNo description
SMARTSM003531.1E-683131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-983126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVEEAEHDSS LLWNDDQSWA FPVLPVHDNG GKLLIDGGKI LLSEGTAVSE QAANDKGKKR  60
SGCGSGESDD HDHDHDHELH IWTERERRKK MRNMFATLHS LIPHLHPRAD KSSIVDEAVI  120
HIKNMQQTLE DLEKQKEEKL KGGQSREAFL AEQGSTSQSQ LQPNANANAN GFFFKTWTSP  180
NVVMNVCGND AHFNIVCSPI KPGLMTYVVF LMDKYNLHLV SAHVASDPTA RTYMLHTRAN  240
GIPQQFPEAA SFLVEETYKQ TATELMLWIN S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575200.0KP257520.1 Salvia miltiorrhiza clone 87 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092560.15e-89transcription factor bHLH95-like
TrEMBLA0A0H3YC600.0A0A0H3YC60_SALMI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.18e-19bHLH family protein