PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007681-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25213.9 Da    PI: 9.993
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007681-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.62.1e-30958150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i fs++g++yey+
  SMil_00007681-RA_Salv  9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEVALICFSTRGRVYEYA 58
                           79***********************************************8 PP
2K-box94.32e-31781728100
                  K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                            +  ++e +++ +qqe++kL+++i+++q+ + hl G++L sLs+ke++qLe++Le+++ +iR+kK+el+l+++e+lqk+e +l++en +
  SMil_00007681-RA_Salv  78 AytTQEINTQFYQQESKKLRQQIQMIQNFNSHLTGDGLASLSVKEMKQLESRLERGIARIRAKKHELILAETENLQKRETQLEQENAC 165
                            23488999******************************************************************************** PP

                  K-box  94 Lrkklee 100
                            Lr+k++e
  SMil_00007681-RA_Salv 166 LRAKIAE 172
                            ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.123161IPR002100Transcription factor, MADS-box
CDDcd002654.24E-42276No hitNo description
SuperFamilySSF554552.49E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003194.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014867.0E-2482170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.55386176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AEVALICFST RGRVYEYANT  60
NIRSTIERYK RATSSSSAYT TQEINTQFYQ QESKKLRQQI QMIQNFNSHL TGDGLASLSV  120
KEMKQLESRL ERGIARIRAK KHELILAETE NLQKRETQLE QENACLRAKI AENEKLQQLS  180
MMPGGQDYAM QAYLSGNVLQ LNMMQAYPLP DRKVLPLGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-21184184Myocyte-specific enhancer factor 2B
1tqe_Q3e-21184184Myocyte-specific enhancer factor 2B
1tqe_R3e-21184184Myocyte-specific enhancer factor 2B
1tqe_S3e-21184184Myocyte-specific enhancer factor 2B
5f28_A3e-21194194MEF2C
5f28_B3e-21194194MEF2C
5f28_C3e-21194194MEF2C
5f28_D3e-21194194MEF2C
6c9l_A3e-21184184Myocyte-specific enhancer factor 2B
6c9l_B3e-21184184Myocyte-specific enhancer factor 2B
6c9l_C3e-21184184Myocyte-specific enhancer factor 2B
6c9l_D3e-21184184Myocyte-specific enhancer factor 2B
6c9l_E3e-21184184Myocyte-specific enhancer factor 2B
6c9l_F3e-21184184Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095997.11e-131agamous-like MADS-box protein AGL11
RefseqXP_011096010.11e-131agamous-like MADS-box protein AGL11
RefseqXP_011096018.11e-131agamous-like MADS-box protein AGL11
RefseqXP_011096026.11e-131agamous-like MADS-box protein AGL11
SwissprotF6I4571e-106AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A4D8ZV731e-149A0A4D8ZV73_SALSN; MADS-box transcription factor, plant
STRINGMigut.C01334.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.16e-98MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]