PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007600-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 321aa    MW: 34640.2 Da    PI: 6.761
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007600-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1753102255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  SMil_00007600-RA_Salv  53 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 102
                            59*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.08953110IPR001471AP2/ERF domain
SMARTSM003802.3E-3253116IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2153110IPR016177DNA-binding domain
CDDcd000185.41E-2853109No hitNo description
PfamPF008477.5E-1153102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2953109IPR001471AP2/ERF domain
PRINTSPR003671.6E-95465IPR001471AP2/ERF domain
PRINTSPR003671.6E-97692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEEALRRLNA APTARGSASK PAAAAAAPQK RCAAAKRPHH KDAPGGGGNN TMRYRGVRRR  60
PWGRYAAEIR DPQSKERRWL GTFDTAEEAA CAYDCAARAM RGVKARTNFV YPAALSPNPG  120
AASENLLPSS FGYGKLSFLL RDYISASTSK YLDANSSFTL SSDFSRNSFN LTGSSSSPSS  180
LCAAAAVVSD AAFNGAENTE INKSCEFQWN DNNCMDFFPA ERSDSGLLHE VLNGFLTNSV  240
KKEEFSPPPP SPSPPAVKRE EYLADYGGAS QFGNILNSAS NFFGFESEFE GLNNQSNGNI  300
LSEIFNYQEG GNLLEANMQN A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1946109771Ethylene-responsive transcription factor ERF096
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086646.18e-64ethylene-responsive transcription factor ESR2-like
TrEMBLA0A4D8ZZ411e-121A0A4D8ZZ41_SALSN; EREBP-like factor
STRINGMigut.K00605.1.p1e-63(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.15e-16ERF family protein