PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00007554-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 306aa MW: 32464.7 Da PI: 4.6909

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007554-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.2e-38	47	105	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++ +kcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s SMil_00007554-RA_Salv 47 HQVVKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS 105 5789****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-29	46	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-33	48	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.422	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MPENWVVLNL EQVKSSRMQD MHGIGEGSGG GGRFISVGDR RLRPLNHQVV KCPRCDSLNT 60 KFCYYNNYNL SQPRHFCKSC RRYWTKGGVL RNVPVGGGCR KTKRSKPKAN ASSAAEDDAP 120 PGETKSSAQS SSSESSSLTT AAAAAATAPP TSAEEGSVPI YTTSDSAVMY NFADASFSNV 180 NPLANPSLDH QPAFVNDRPS TAGQIFSAEG GSFTGLMTSS EELMMGLDIA TTSYGQEEPA 240 AEKASVGVGK ADDLKMEDIS NAAALGWGSG GDDGDQGLFD LTAGVDPAYW SQSDWTDNDQ 300 SLNYLP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028132	9e-65	AB028132.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-8.
GenBank	AK061000	9e-65	AK061000.1 Oryza sativa Japonica Group cDNA clone:006-203-F09, full insert sequence.
GenBank	AK100892	9e-65	AK100892.1 Oryza sativa Japonica Group cDNA clone:J023130J11, full insert sequence.
GenBank	AK101321	9e-65	AK101321.1 Oryza sativa Japonica Group cDNA clone:J033034E07, full insert sequence.
GenBank	AP005284	9e-65	AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12.
GenBank	AP014958	9e-65	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	9e-65	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBank	GQ183532	9e-65	GQ183532.1 Oryza sativa Japonica Group Dof-type zinc finger protein 05 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072952.1	2e-93	dof zinc finger protein DOF5.4-like
TrEMBL	A0A4D9AF69	1e-127	A0A4D9AF69_SALSN; Uncharacterized protein
STRING	Migut.K01260.1.p	1e-74	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-40	OBF binding protein 4