PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007533-RA_Salv
Common NameMYB48
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 234aa    MW: 27183 Da    PI: 8.3987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007533-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.8e-131461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
  SMil_00007533-RA_Salv 14 RGPWTIEEDNKLMNFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61
                           89********************************************97 PP

2Myb_DNA-binding50.54.8e-1667110146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T+ E++ +++++ +lG++ W++Ia +++ gRt++++k++w++
  SMil_00007533-RA_Salv  67 RGALTEAEEDMIIELHSRLGNR-WSKIATHFP-GRTDNEIKNYWNT 110
                            7889******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.251961IPR017930Myb domain
SuperFamilySSF466892.68E-2811108IPR009057Homeodomain-like
SMARTSM007171.2E-61363IPR001005SANT/Myb domain
PfamPF002491.5E-111461IPR001005SANT/Myb domain
CDDcd001675.87E-61661No hitNo description
PROSITE profilePS5129426.11962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2565117IPR009057Homeodomain-like
SMARTSM007174.9E-1566114IPR001005SANT/Myb domain
PfamPF002499.7E-1567110IPR001005SANT/Myb domain
CDDcd001674.08E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRQPCCEKV GLKRGPWTIE EDNKLMNFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY  60
LRPDLKRGAL TEAEEDMIIE LHSRLGNRWS KIATHFPGRT DNEIKNYWNT RIKKKMKLKG  120
LDPVTHKPVQ TKTRDFETNN GEMQHHQSLG FQETTISLIP NLKDYDDQMQ HKREEGSPSN  180
QSRDDCCIKN SDMGSSLVFQ NKESLGSFTM DSYQNLMDNP FFWDCFTGLG ESFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594020.0KF059402.1 Salvia miltiorrhiza MYB-related transcription factor (MYB48) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071180.11e-114protein ODORANT1
SwissprotQ9C7U77e-73MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A059PSN51e-174A0A059PSN5_SALMI; MYB-related transcription factor
STRINGMigut.E00231.1.p8e-98(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-81myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]