PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007504-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 135aa    MW: 15054.4 Da    PI: 6.8117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007504-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.2e-211869256
                    AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                           +++GVr+++ +gr++AeIrd    + + +r++lg+fgtaeeAa+a+++a+  ++g+
  SMil_00007504-RA_Salv 18 KFRGVRRRP-WGRYAAEIRDS---NrHGARVWLGTFGTAEEAARAYDRAAYTMRGH 69
                           89*******.**********4...3234**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.49E-161776No hitNo description
PfamPF008471.5E-161869IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-231878IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-301878IPR001471AP2/ERF domain
PROSITE profilePS5103223.1561876IPR001471AP2/ERF domain
SMARTSM003809.1E-331882IPR001471AP2/ERF domain
PRINTSPR003678.6E-111930IPR001471AP2/ERF domain
PRINTSPR003678.6E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDENPKDGGR RDSAGEAKFR GVRRRPWGRY AAEIRDSNRH GARVWLGTFG TAEEAARAYD  60
RAAYTMRGHL AVLNFPQEYP AFASQSSSSS SSSAAAASSS TSRNEAEQGK QVFEFEYLDD  120
KLLEDLLEFG EKKHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-3981224114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827144.13e-49PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A4D9AVX79e-62A0A4D9AVX7_SALSN; Pathogenesis-related proteins transcriptional activator PTI5
STRINGMigut.D00418.1.p7e-48(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.16e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]