PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00007441-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HB-other

Protein Properties

Length: 835aa MW: 94826.9 Da PI: 6.2219

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007441-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.9	3e-17	3	52	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t++qle+Le+ ++ + yps++ r+eL+ klgLt+rq ++WF+ rR k++k SMil_00007441-RA_Salv 3 TPSQLEVLEKTYAIETYPSEALRAELSVKLGLTDRQLQMWFCHRRLKDRK 52 89**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.273	1	53	IPR001356	Homeobox domain
SMART	SM00389	1.2E-11	1	57	IPR001356	Homeobox domain
CDD	cd00086	8.70E-13	2	54	No hit	No description
SuperFamily	SSF46689	4.28E-14	2	52	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-15	3	59	IPR009057	Homeodomain-like
Pfam	PF00046	6.9E-15	3	52	IPR001356	Homeobox domain
SMART	SM00571	5.3E-24	527	586	IPR018501	DDT domain
PROSITE profile	PS50827	18.207	527	586	IPR018501	DDT domain
Pfam	PF02791	7.2E-19	528	583	IPR018501	DDT domain
Pfam	PF05066	2.4E-15	703	771	IPR007759	HB1/Asxl, restriction endonuclease HTH domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MKTPSQLEVL EKTYAIETYP SEALRAELSV KLGLTDRQLQ MWFCHRRLKD RKPSAEKRQK 60 KSTITSAVAE FSSGTVPEKV VSSSDVANDS RSGLNLFGNM EQQQQQQQRV AHKAGTAVPR 120 ISTELPSMRR YYEPPLAISE QRAIKFVEAQ LGEPLRDDGP ILGMEFDPLP PGAFGAPIVT 180 SDQQKRAGRS YDAHLYERLD AKPIKGASRV VHEYQFLPEK PSTRTDPYER VPHYYGSPPD 240 VLNSRVPLPT GRPVIRSNEQ GASGYLQGQM PSLSLLPQQG RQEAHLSPAP GEVDVGPLTA 300 PVVNTNVDSQ LFVHPGSVFD NQITTPERRT VLDPERLERK RKAEEARIAK EVEAHEKRIR 360 KELEKQDILR RKKEEQMRKE MERQDRERRK EEERLLREKQ REEERCQREQ RREMERREKF 420 LQKEYIKAEK MRLKEEMRRE KEAARLKAAN NRAAARRIAK ESMELVEDER LELMEIAALN 480 RGLPSILALD SETLQNLDLL KDKLPEFPPK SVHLKKPFHV QPWSDSEENL GNLLMVWRFL 540 ISFADVLGLW PFTLDEFIQA LHDTDPRLLG EIHIALLRSI IKDIGDVGRA SDPNSAGIPV 600 GGHPHIVEGA YAWGFDLLSW QRHLNPLTWP EVLRQFALSA DFGPKLRNSD IKPACFQNDS 660 EGDNGADTIS NIRSGVAAEN AVSIMQERGF SNSRRSRHRL TPGTVKFAAF HILSLEGSKG 720 LSILEVADKI QRSGLRDLTT SKTPEASISA ALSRDTKLFE RTAPSTYCVR SPYRKDPDDA 780 EALLSEARER IRVYQNGDVD EEEPDVEKDD LERDQDSESD IGDDPDVDDL DALAS

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MKTPSQLEVL EKTYAIETYP SEALRAELSV KLGLTDRQLQ MWFCHRRLKD RKPSAEKRQK  60
KSTITSAVAE FSSGTVPEKV VSSSDVANDS RSGLNLFGNM EQQQQQQQRV AHKAGTAVPR  120
ISTELPSMRR YYEPPLAISE QRAIKFVEAQ LGEPLRDDGP ILGMEFDPLP PGAFGAPIVT  180
SDQQKRAGRS YDAHLYERLD AKPIKGASRV VHEYQFLPEK PSTRTDPYER VPHYYGSPPD  240
VLNSRVPLPT GRPVIRSNEQ GASGYLQGQM PSLSLLPQQG RQEAHLSPAP GEVDVGPLTA  300
PVVNTNVDSQ LFVHPGSVFD NQITTPERRT VLDPERLERK RKAEEARIAK EVEAHEKRIR  360
KELEKQDILR RKKEEQMRKE MERQDRERRK EEERLLREKQ REEERCQREQ RREMERREKF  420
LQKEYIKAEK MRLKEEMRRE KEAARLKAAN NRAAARRIAK ESMELVEDER LELMEIAALN  480
RGLPSILALD SETLQNLDLL KDKLPEFPPK SVHLKKPFHV QPWSDSEENL GNLLMVWRFL  540
ISFADVLGLW PFTLDEFIQA LHDTDPRLLG EIHIALLRSI IKDIGDVGRA SDPNSAGIPV  600
GGHPHIVEGA YAWGFDLLSW QRHLNPLTWP EVLRQFALSA DFGPKLRNSD IKPACFQNDS  660
EGDNGADTIS NIRSGVAAEN AVSIMQERGF SNSRRSRHRL TPGTVKFAAF HILSLEGSKG  720
LSILEVADKI QRSGLRDLTT SKTPEASISA ALSRDTKLFE RTAPSTYCVR SPYRKDPDDA  780
EALLSEARER IRVYQNGDVD EEEPDVEKDD LERDQDSESD IGDDPDVDDL DALAS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085379.1	0.0	homeobox-DDT domain protein RLT2-like
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A4D9AR91	0.0	A0A4D9AR91_SALSN; Uncharacterized protein
STRING	XP_009773812.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	0.0	Homeodomain-like transcriptional regulator