PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007414-RA_Salv
Common NameMYB58
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 267aa    MW: 30109.4 Da    PI: 6.4215
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007414-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.8e-15956148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W+++Ed++l++++ ++G g+W++I+   g+ R +k+c++rw +yl
  SMil_00007414-RA_Salv  9 KGLWSPDEDLKLKNYIFKYGHGCWSSIPINAGLQRNGKSCRLRWINYL 56
                           678*******************************************97 PP
2Myb_DNA-binding56.37.6e-1862107148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+++ eE+e+++ +++ lG++ W+ Ia++++ gRt++++k++w++yl
  SMil_00007414-RA_Salv  62 RGAFSFEEEEKILALHRVLGNK-WSQIANHLP-GRTDNEIKNHWHSYL 107
                            899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.406456IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-22459IPR009057Homeodomain-like
SuperFamilySSF466892.68E-297103IPR009057Homeodomain-like
SMARTSM007178.5E-12858IPR001005SANT/Myb domain
PfamPF002491.8E-13956IPR001005SANT/Myb domain
CDDcd001672.08E-101256No hitNo description
PROSITE profilePS5129427.37657111IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2560111IPR009057Homeodomain-like
SMARTSM007171.1E-1661109IPR001005SANT/Myb domain
PfamPF002495.9E-1662107IPR001005SANT/Myb domain
CDDcd001673.28E-1264107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGCKQKHKKG LWSPDEDLKL KNYIFKYGHG CWSSIPINAG LQRNGKSCRL RWINYLRPGL  60
KRGAFSFEEE EKILALHRVL GNKWSQIANH LPGRTDNEIK NHWHSYLKKR VSKLAEAKSG  120
ELEAPPSSSK STPQDPSFES LENTEASSTD TDQSMQQIDQ QQLPKVLFAE WLSLEQFNGP  180
NQGSSSSTAQ HLKYTFDYGS ANSEDSSAHA QQLNGEALGN EIHTKPNFIS IDDMLRSPFG  240
FEDQISESGL VDYFPGDFNF SCDGLYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2491117108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594120.0KF059412.1 Salvia miltiorrhiza MYB-related transcription factor (MYB58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549243.11e-120transcription factor LAF1-like
SwissprotQ9M0K43e-56LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A059PSP50.0A0A059PSP5_SALMI; MYB-related transcription factor
STRINGPGSC0003DMT4000370801e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.17e-59myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]