PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007348-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 309aa    MW: 34725.8 Da    PI: 8.2178
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007348-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.63.4e-2873157366
                    TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................s 66 
                            g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk i+WLl + k +i++l+ +                     +
  SMil_00007348-RA_Salv  73 GGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVIDWLLDATKLEIDKLPPLptnflqfhqpiatvplmpnhdP 157
                            79***********************************************************997777766666666666554440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.91474132IPR017887Transcription factor TCP subgroup
PfamPF036342.8E-2574135IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MQETYNRKLQ GYILDLSDEA NMRMNPRERG LGGKKEEDSK FPKMSTSSPS SSSRQWSSCF  60
KNPRIVRVSR SFGGKDRHSK VCTVKGLRDR RIRLSVPTAI QLYDLQERLG LSQPSKVIDW  120
LLDATKLEID KLPPLPTNFL QFHQPIATVP LMPNHDPYAS EFLSPNLFKT CTDVDQGNSS  180
GEGFGGFNLF PLNSSQFPTP FNNPNYFQLE PPNLSLSQFG GGFGFSNHQE QSNCSLSSSS  240
QASTSQIYMS ALSSPHFQPY FATCVENDHF REIGHLQQYS FINSPMRSFS LNASLHSSEN  300
QTAAKDKDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1979133155Putative transcription factor PCF6
5zkt_B6e-1979133155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072882.12e-70transcription factor TCP17-like
TrEMBLA0A4D8YNM61e-115A0A4D8YNM6_SALSN; Uncharacterized protein
STRINGMigut.D01635.1.p3e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.19e-44plastid transcription factor 1