PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007243-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 302aa    MW: 33728.1 Da    PI: 10.4913
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007243-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19170220256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  SMil_00007243-RA_Salv 170 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 220
                            59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-28169229No hitNo description
Gene3DG3DSA:3.30.730.102.6E-32170228IPR001471AP2/ERF domain
PROSITE profilePS5103222.932170227IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-23170228IPR016177DNA-binding domain
SMARTSM003807.7E-40170233IPR001471AP2/ERF domain
PfamPF008471.3E-12171220IPR001471AP2/ERF domain
PRINTSPR003674.8E-11171182IPR001471AP2/ERF domain
PRINTSPR003674.8E-11193209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDSAKNRGKS KKMIEKESAM DWERGEAQNL DREKWCPAFD EASFSNRPFK KVRSPDRRQN  60
SSSSSSSPPL LPAMTLPRRT FLLARQSSAA GAIGVESNPI VPAAAADDFI RAAPPQRRHS  120
CSSSAAAALE RRAEFEPEGA DDDDEQAGAA RACGALPPAR AMPPLTATKL YRGVRQRHWG  180
KWVAEIRLPR NRTRLWLGTF DTAEDAALAY DREAFKLRGE NARLNFPELF VGKAAPPAPA  240
TDEEEHEHSS SPSLPSLIRL RRCQCQRWIR RRSPRPPLPW KAEAMRTAET ACLRRRSWCG  300
AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20169227463ATERF1
3gcc_A1e-20169227463ATERF1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429861e-66AK242986.1 Oryza sativa Japonica Group cDNA, clone: J090094O16, full insert sequence.
GenBankAP0047681e-66AP004768.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0010C01.
GenBankAP0055131e-66AP005513.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0014E22.
GenBankAP0149581e-66AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107675.14e-52ethylene-responsive transcription factor ERF054-like
TrEMBLA0A4D8XTP52e-68A0A4D8XTP5_SALSN; EREBP-like factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.19e-39ERF family protein