PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007215-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 387aa    MW: 42831.9 Da    PI: 9.5434
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007215-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31316373359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh 
  SMil_00007215-RA_Salv 316 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHA 373
                            99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-16267312IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-33302373IPR003657WRKY domain
PROSITE profilePS5081130.917309375IPR003657WRKY domain
SuperFamilySSF1182905.1E-27311374IPR003657WRKY domain
SMARTSM007743.1E-38314374IPR003657WRKY domain
PfamPF031064.0E-27316372IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
LALTFDGKQA TIDNTCTALK IEKEHHHFDS LLYFIPFTSF QLLFFSQISL LLYLSSLWEM  60
AVELMPGYNF TSKMEVSAAQ EAAAAGLQSV EKLMRLLSHQ QNFQEIQAAD DYKAVADVAV  120
YKFKKFISLL DRTPRTGHAR FRRGPVPNSP PPPQKTEPAG PSAQTPKTEE SAPGSIIYCP  180
TPIQRLPPLP VPHNHQQQVK NVPNPIERKE SSTTINFASP ATSFMSSLTG DTDSLQPSMS  240
MSSGFQITNL SQVSSAGRPP LSTSSFKRKC SSMDDATAKC GSGSSRCHCP KKRKSRLKRV  300
VRVPAISMKM ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERALDDPT  360
MLIVTYEGEH NHALSNMETP ALVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21302374273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231430.0KM823143.1 Salvia miltiorrhiza WRKY protein (WRKY20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074403.10.0probable WRKY transcription factor 7
SwissprotQ9STX05e-98WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0D5YA020.0A0A0D5YA02_SALMI; WRKY protein
STRINGMigut.N02732.1.p1e-171(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.19e-75WRKY DNA-binding protein 7