PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00007185-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 136aa MW: 15326.3 Da PI: 6.8068 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.7 | 8.8e-08 | 64 | 96 | 5 | 38 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.S CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK.l 38 h Er RR+++++ f++L llP+ + p++K + SMil_00007185-RA_Salv 64 HILTERERRKKMRDMFSNLHALLPHiP---PKRKeM 96 8889*********************99...777755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.78E-7 | 62 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.2E-6 | 64 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-5 | 64 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.06E-5 | 64 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MLAMGEELGG EGLLWDDDQS WEFPKLAKSA DISNLGGQRI KEAPPPPEKG KKRSAAARGE 60 SELHILTERE RRKKMRDMFS NLHALLPHIP PKRKEMSEER ETLEGVTPGD EVRSDCQRGT 120 DKERLRLRLP SGGAQE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257510 | 0.0 | KP257510.1 Salvia miltiorrhiza clone 77 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088239.1 | 5e-21 | transcription factor bHLH95-like isoform X1 | ||||
TrEMBL | A0A0H3YC55 | 3e-92 | A0A0H3YC55_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010529068.1 | 6e-15 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1324 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 1e-12 | bHLH family protein |