PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00007150-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27423.7 Da PI: 10.7021 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd +l+++v+ +G g W++++++ g+ R +k+c++rw +yl SMil_00007150-RA_Salv 16 KGFWKPEEDMILKKYVESHGEGKWSLVSKKTGLMRGGKSCRLRWKNYL 63 688*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 6e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l SMil_00007150-RA_Salv 69 RGIMSQDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 114 67789*****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-21 | 9 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.981 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.25E-28 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-13 | 17 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.26E-10 | 19 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 66 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.956 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.78E-11 | 72 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEGKEEEEVK KGSLRKGFWK PEEDMILKKY VESHGEGKWS LVSKKTGLMR GGKSCRLRWK 60 NYLRPNIKRG IMSQDEKDLI IRLHKLLGNR WSLIAGRLPG RTDNEVKNYW NTHLNKRPSR 120 AQIHEPPPPP TVIEAAPPIA KIEGGNAENT KQISLLALLD ARRSTLDAFA SLDSSQLLDT 180 RCSRRRAIVQ FELFLVLLDS SMLDARRLRL ARQFSVARHL DAQHLSARRF SVEQCANYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-24 | 13 | 117 | 4 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059356 | 0.0 | KF059356.1 Salvia miltiorrhiza MYB-related transcription factor (MYB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020549563.1 | 2e-66 | transcription factor MYB82 | ||||
Swissprot | Q9LTF7 | 4e-62 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A059PRN7 | 1e-104 | A0A059PRN7_SALMI; MYB-related transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 4e-63 | myb domain protein 82 |