PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00007088-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bZIP

Protein Properties

Length: 369aa MW: 41856.8 Da PI: 7.4696

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007088-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	82	114	1	33
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee 33 ek+++ +rr+++NReAAr+sR+RKka++++Le+ SMil_00007088-RA_Salv 82 EKPSQIQRRLAQNREAARKSRLRKKAYVQQLET 114 788999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0015	82	142	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-7	82	115	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-7	86	120	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-7	88	128	No hit	No description
PROSITE pattern	PS00036	0	89	104	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.9E-26	171	245	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
LFRLVLYSKV VVRMTTPTTQ FAPSSRLGLY EPMHQMSMWE DTFDGEAGVC MMNEADSKTD 60 DKIEYTSDKS AEDSRASRSI SEKPSQIQRR LAQNREAARK SRLRKKAYVQ QLETSRLKLA 120 QLELELERAR QQGMLMAGAS AHMGLCGNVS SGIGVFEMEY RHWVEEQERK ISELKKVLQT 180 CIGEAELRVM VESVLSHYCN LFRIKRDAAR ADAFYLVSGM WRTSVERFFL WIGGFKPSEL 240 INVVMPQLQP LTDLQTADVD NLKHSCMQAE DALSQGMEKL QQTLAQSVTF LPPGAGNYCS 300 QTAFALENLE SLESFINQAD HLRQQTLQHM SRILTTRQAA NGLVAFGEYF QRLRTLSSLW 360 SARCPGEPA

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

LFRLVLYSKV VVRMTTPTTQ FAPSSRLGLY EPMHQMSMWE DTFDGEAGVC MMNEADSKTD  60
DKIEYTSDKS AEDSRASRSI SEKPSQIQRR LAQNREAARK SRLRKKAYVQ QLETSRLKLA  120
QLELELERAR QQGMLMAGAS AHMGLCGNVS SGIGVFEMEY RHWVEEQERK ISELKKVLQT  180
CIGEAELRVM VESVLSHYCN LFRIKRDAAR ADAFYLVSGM WRTSVERFFL WIGGFKPSEL  240
INVVMPQLQP LTDLQTADVD NLKHSCMQAE DALSQGMEKL QQTLAQSVTF LPPGAGNYCS  300
QTAFALENLE SLESFINQAD HLRQQTLQHM SRILTTRQAA NGLVAFGEYF QRLRTLSSLW  360
SARCPGEPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012829825.1	0.0	PREDICTED: transcription factor TGA4-like isoform X2
Swissprot	Q39162	1e-137	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A4D8ZUK4	0.0	A0A4D8ZUK4_SALSN; Transcription factor TGA
STRING	Migut.C00214.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-128	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]