PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00007035-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 238aa MW: 27310.2 Da PI: 10.0968 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.4 | 4.3e-12 | 60 | 86 | 30 | 56 |
HHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 30 reeLAkklgLterqVkvWFqNrRakek 56 LAk+l+L rqV vWFqNrRa+ k SMil_00007035-RA_Salv 60 YCALAKQLNLRPRQVEVWFQNRRARTK 86 568**********************98 PP | |||||||
2 | HD-ZIP_I/II | 92.7 | 4.2e-30 | 58 | 121 | 27 | 91 |
HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 + +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr +l SMil_00007035-RA_Salv 58 DPYCALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVNELR-AL 121 55678********************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.6E-4 | 32 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.18E-7 | 55 | 89 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-11 | 55 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-11 | 55 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-9 | 60 | 86 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50071 | 11.936 | 63 | 88 | IPR001356 | Homeobox domain |
Pfam | PF02183 | 3.9E-11 | 88 | 122 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.3E-25 | 88 | 131 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSIKGWQWAG SGPDPAWSRS RSVFLCLDPD PVQIHWIQKN EIQTQIHEIH WISGPDPDPY 60 CALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLRRC CENLTEENRR LQKEVNELRA 120 LKLSPQLYMN MSPPTTLTMC PQCERVAVSS SSTLRLRVLC SAHVETGDFT LLCSAADRRW 180 GRPALQQTGG GRRPEVGKAG GADTGGWVSR AIGAWRIGER RRWDGRSRVS NLKWNFKL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 88 | RRARTKLKQ |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 1e-50 | homeobox-leucine zipper protein 4 |