PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006993-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 492aa    MW: 55847.1 Da    PI: 9.1064
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006993-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885e-28959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+ien++nrqvt+skRrng++KKA+EL vLCda+++++++sst+kl+ey+s
  SMil_00006993-RA_Salv  9 KKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKISILMISSTQKLHEYIS 59
                           68***********************************************86 PP
2K-box71.42.7e-2471169199
                  K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                            yqk+  ++l+++++e++q++l+kLk+ ++nL +e+R+++Ge+L++L +++  +L ++++kslk iR++K++ l + i++++kk+k+ +
  SMil_00006993-RA_Salv  71 YQKTLRVDLWSSHYEKMQEHLKKLKEINRNLWKEIRQRMGESLNDLGYEQTVHLIEDIDKSLKLIRDRKYKDLENRIDRTKKKKKNSE 158
                            78888889******************************************************************************** PP

                  K-box  89 eenkaLrkkle 99 
                            +++k L  +++
  SMil_00006993-RA_Salv 159 DIHKGLALQFD 169
                            ****9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.726161IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.94E-36280No hitNo description
PRINTSPR004044.5E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-34395IPR002100Transcription factor, MADS-box
PfamPF003196.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-1382167IPR002487Transcription factor, K-box
PROSITE profilePS5129713.14984174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKISILMISS TQKLHEYISP  60
TITTKQIFDE YQKTLRVDLW SSHYEKMQEH LKKLKEINRN LWKEIRQRMG ESLNDLGYEQ  120
TVHLIEDIDK SLKLIRDRKY KDLENRIDRT KKKKKNSEDI HKGLALQFDA VHHNDPHYGL  180
VENEGDYNSM LGFRHGGPRI IALHLPPNNH HHHHHHPSLH GGTGASDLTT FALLEHQQIR  240
PNTTRIHKSA KITRARWVPA PAAKKPAAAG PSARARRSQR SLVLRARWAS VLGQASGRWH  300
AALAGLTNLI EWPYVYDLML EGDPIVEGKN NDNLKLFRSD SQNLQASDLS VGQSISTSVF  360
KEKDVVEENL DETHGDPIKD HVGVCYEPNS EDNSLQESYE VSEVVADEKK TIGVTPDRQL  420
DMSVEDVHES QVSCGIPTDG SHVIDAEIGG EATAKYTRWV SSARWVPVYR PLKPALAGFV  480
DFKSKNFTAN SC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-14159159MEF2C
5f28_B6e-14159159MEF2C
5f28_C6e-14159159MEF2C
5f28_D6e-14159159MEF2C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153DRTKKKK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-78MIKC_MADS family protein