PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006840-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 171aa    MW: 17976.2 Da    PI: 4.1577
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006840-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-18455155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr +k++++Wv+eIr p     r   r++lg+f tae+Aa a++ a+++l+g
  SMil_00006840-RA_Salv  4 PSYRGVRKRKSSNKWVSEIRQP-----RtpNRIWLGTFPTAEMAAVAYDVAALALKG 55
                           57*******************9.....4478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-12455IPR001471AP2/ERF domain
CDDcd000185.37E-29465No hitNo description
SMARTSM003802.1E-31569IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-28565IPR001471AP2/ERF domain
PROSITE profilePS5103221.601563IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-20565IPR016177DNA-binding domain
PRINTSPR003678.5E-6617IPR001471AP2/ERF domain
PRINTSPR003678.5E-62945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSQPSYRGVR KRKSSNKWVS EIRQPRTPNR IWLGTFPTAE MAAVAYDVAA LALKGSQADL  60
NFPNSASSFP VPASTSAADI QAAAASAAAA AGAAVDALCC GGSVEKAEAA VALQPPVVVD  120
EFVDEDLIFD LPNVLASMAQ GMLMTPPRFG FADDDADFDG ALTYDYLWNS P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-122651174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094407.14e-69ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR01e-52ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A4D8YYA63e-68A0A4D8YYA6_SALSN; Uncharacterized protein
STRINGSolyc09g009240.1.18e-60(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.13e-28ERF family protein