PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006607-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NF-YB | ||||||||
Protein Properties | Length: 197aa MW: 19943.1 Da PI: 7.5025 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 186.6 | 1.8e-58 | 19 | 114 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yveplkvyl+k SMil_00006607-RA_Salv 19 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLAK 106 89************************************************************************************** PP NF-YB 90 yrelegek 97 yre+egek SMil_00006607-RA_Salv 107 YREMEGEK 114 ******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.0E-55 | 13 | 122 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.71E-40 | 21 | 119 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.5E-28 | 24 | 88 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.2E-21 | 52 | 70 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 55 | 71 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.2E-21 | 71 | 89 | No hit | No description |
PRINTS | PR00615 | 2.2E-21 | 90 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MADSDNDSGG HSNSNASSRE QDRFLPIANV SRIMKKALPA NAKISKDAKE TVQECVSEFI 60 SFVTGEASDK CQREKRKTIN GDDLLWAMTT LGFEEYVEPL KVYLAKYREM EGEKSSIAGV 120 KEGGGGGGGG GAVSSGAGFN GGGIYGGNVM GFHPGGQMYG GGGAGGGGFQ HMGKGGLGNM 180 GGGGGYGGGG ASTGRPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 7e-50 | 14 | 109 | 2 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT089346 | 5e-84 | BT089346.1 Soybean clone JCVI-FLGm-1B8 unknown mRNA. | |||
GenBank | KT031158 | 5e-84 | KT031158.1 Glycine max clone HN_CCL_197 CCAAT transcription factor (Glyma15g12570.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100345.1 | 8e-94 | nuclear transcription factor Y subunit B-3 | ||||
Swissprot | O23310 | 6e-77 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A2G9HCD2 | 7e-93 | A0A2G9HCD2_9LAMI; CCAAT-binding factor, subunit A (HAP3) | ||||
STRING | Migut.M00176.1.p | 2e-86 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 9e-68 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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