PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006578-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 244aa    MW: 26007.3 Da    PI: 6.1558
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006578-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.4e-18159192134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            C +C  tkTp+WR gp g+k+LCnaCG++y++ +
  SMil_00006578-RA_Salv 159 CMHCEITKTPQWRAGPMGPKSLCNACGVRYKSGR 192
                            99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.3E-16153203IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.49153189IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-14157216No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14157190IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.07E-14158205No hitNo description
PfamPF003201.2E-15159192IPR000679Zinc finger, GATA-type
PROSITE patternPS003440159184IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGPNLVDEID CANFFDQIDD LIEFPPDNEC GGGAGGVGAG DFVSSGDSKD FPSMWSDTLP  60
ETDLLFASGG SASDLSAELS VPSCHSAPLP IALLVEAPPK FVPTGFSSKS ENFAESPPTK  120
VPKPAGAEHK KKKKIKITLT ANQEETHEIP QVQQAVRKCM HCEITKTPQW RAGPMGPKSL  180
CNACGVRYKS GRLFPEYRPA ASPTFVPSLH SNSHKKVVEM RTKFGGGATT TTPTTSEPEH  240
APNP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022139214.13e-63GATA transcription factor 8
TrEMBLA0A3S9LK391e-58A0A3S9LK39_POPTO; GATA transcription factor
STRINGXP_009770305.16e-58(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-41GATA family protein