PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006537-RA_Salv | ||||||||
Common Name | MYB11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 168aa MW: 19539.3 Da PI: 9.2344 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.1e-16 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ede+l +++ ++G g+W+++a g+ R +k+c++rw +yl SMil_00006537-RA_Salv 5 KGLWSPDEDERLRNYIVKHGHGCWTSVAINAGLQRNGKSCRLRWINYL 52 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.3 | 1.7e-13 | 58 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ E++ + ++k lG++ W+ Ia+++ gR+++++k++w++yl SMil_00006537-RA_Salv 58 RGAFSMAEEDTIFTLHKVLGNK-WSQIAQHLA-GRSDNEIKNYWHSYL 103 8999******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.74E-29 | 1 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.349 | 1 | 56 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-22 | 2 | 55 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-12 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 5 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.82E-10 | 8 | 52 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 56 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.356 | 57 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-12 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-12 | 58 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.18E-8 | 64 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MGKRKGLWSP DEDERLRNYI VKHGHGCWTS VAINAGLQRN GKSCRLRWIN YLRPGLKRGA 60 FSMAEEDTIF TLHKVLGNKW SQIAQHLAGR SDNEIKNYWH SYLKKRVAKM EVDKSPNLSL 120 PKLFFADWLC LDQDLGHTSN LEDHTCLFDD IHIPIHHFPP QFNTFSQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-24 | 5 | 107 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059365 | 0.0 | KF059365.1 Salvia miltiorrhiza MYB-related transcription factor (MYB11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353308.1 | 6e-67 | PREDICTED: transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 2e-52 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A059PRI4 | 1e-124 | A0A059PRI4_SALMI; MYB-related transcription factor | ||||
STRING | PGSC0003DMT400037080 | 2e-66 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 2e-55 | myb domain protein 19 |
Publications ? help Back to Top | |||
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