PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006484-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GATA | ||||||||
Protein Properties | Length: 297aa MW: 32564.1 Da PI: 6.51 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.1 | 1.8e-16 | 219 | 255 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ kg+ SMil_00006484-RA_Salv 219 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 255 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.3E-10 | 78 | 113 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.347 | 78 | 113 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.9E-12 | 80 | 112 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.3E-15 | 145 | 187 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.185 | 145 | 187 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.697 | 213 | 271 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.4E-14 | 213 | 266 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-13 | 215 | 277 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.6E-15 | 218 | 260 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.08E-14 | 218 | 261 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 219 | 246 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-14 | 219 | 255 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MDGIHGEEPG MMHYLQDQNH HGLHHHHMSN GNTIDQDEHG EESNIVTTGG VNEVMDGEVG 60 ANMGTQPDNG TMIPHVGDSE NSNQLSLSFQ GQVYVFDSVS PEKVQAVLLL LGGREMPPNL 120 PSVPISSPNN RGLSSTPQKF NVPQRLASLI RFREKRKERN FEKKIRYTVR KEVALRMQRN 180 KGQFTSSKPN QDDSPSAVAN WDPSWGADGD GSHAQNISCR HCGISEKSTP MMRRGPEGPR 240 TLCNACGLMW ANKGTLRDLS KAAPLGANPP RNRSEENGNF EAEEMVLSAT GNSNDSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072744.1 | 1e-164 | GATA transcription factor 28 | ||||
Swissprot | Q8H1G0 | 1e-101 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A4D8YWD2 | 0.0 | A0A4D8YWD2_SALSN; Uncharacterized protein | ||||
STRING | Migut.I01184.1.p | 1e-155 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2672 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-85 | ZIM-like 1 |