PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006484-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 297aa    MW: 32564.1 Da    PI: 6.51
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006484-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.8e-16219255135
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  SMil_00006484-RA_Salv 219 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 255
                            *****99999************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.3E-1078113IPR010399Tify domain
PROSITE profilePS5132014.34778113IPR010399Tify domain
PfamPF062003.9E-1280112IPR010399Tify domain
PfamPF062031.3E-15145187IPR010402CCT domain
PROSITE profilePS5101713.185145187IPR010402CCT domain
PROSITE profilePS501149.697213271IPR000679Zinc finger, GATA-type
SMARTSM004019.4E-14213266IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-13215277No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15218260IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.08E-14218261No hitNo description
PROSITE patternPS003440219246IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14219255IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDGIHGEEPG MMHYLQDQNH HGLHHHHMSN GNTIDQDEHG EESNIVTTGG VNEVMDGEVG  60
ANMGTQPDNG TMIPHVGDSE NSNQLSLSFQ GQVYVFDSVS PEKVQAVLLL LGGREMPPNL  120
PSVPISSPNN RGLSSTPQKF NVPQRLASLI RFREKRKERN FEKKIRYTVR KEVALRMQRN  180
KGQFTSSKPN QDDSPSAVAN WDPSWGADGD GSHAQNISCR HCGISEKSTP MMRRGPEGPR  240
TLCNACGLMW ANKGTLRDLS KAAPLGANPP RNRSEENGNF EAEEMVLSAT GNSNDSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072744.11e-164GATA transcription factor 28
SwissprotQ8H1G01e-101GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A4D8YWD20.0A0A4D8YWD2_SALSN; Uncharacterized protein
STRINGMigut.I01184.1.p1e-155(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-85ZIM-like 1