PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00006394-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 556aa MW: 62926 Da PI: 7.5099

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006394-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50	9.9e-16	68	135	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 +fY+eYA++vGF +++++s++sk++g++++ + Cs+ g+r +++++ ++r+ +t+Cka++++kk+k SMil_00006394-RA_Salv 68 SFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSRPQSSTS----ISQRPCAKTDCKASMHIKKRK 135 5**************************************998877....999*************994 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-13	68	136	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.939	261	297	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.0E-6	261	294	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-5	272	299	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MEIDLELPSL DIRNNDGGIG NEEIVADNEI MGDEDGVNLK VLSDNRGRVE SYMPQNGMEF 60 ETKEAAYSFY REYARSVGFG ITIKASRRSK KSGKFIDIKI ACSRFGSRPQ SSTSISQRPC 120 AKTDCKASMH IKKRKWVPTY MREVFLGGFC TVERSQSVVS FFDKYLQKET RFHEFIDQYK 180 LFLRECCEQE VKAEVETRSS GPILISHSPF EKQMSKLYTN DIFKKFQAEV SGTLSCTPEK 240 EGEDEETIVY RVYDLERKQS FTVSWSKGIY GIYCLCRLFE YSGFLCRHSL SVLQLSSIST 300 IPSNYILKRW TRAAKIIDIP QASASTNFRV QRLNDICKLS IKVGEEGSIS EEAYKVAYHA 360 LEEAMEHCAR LNYSAKSILE TTKTAAHGLL DVGQNKDKSI AKASKTKVPK KRKVRAEPET 420 VLSTGMEESS QDVEQLNRQS HRLHDSYISQ QDFQGVEPEL RNPIVNGYSG AEHGGPGHLS 480 SLSSLQDCYY NDQSLMQGVL GNFSARVSHH ATQQNLHALL QGQFSFRPLS LEGCSQLRDS 540 LQNENSVSMM SKHLHD

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MEIDLELPSL DIRNNDGGIG NEEIVADNEI MGDEDGVNLK VLSDNRGRVE SYMPQNGMEF  60
ETKEAAYSFY REYARSVGFG ITIKASRRSK KSGKFIDIKI ACSRFGSRPQ SSTSISQRPC  120
AKTDCKASMH IKKRKWVPTY MREVFLGGFC TVERSQSVVS FFDKYLQKET RFHEFIDQYK  180
LFLRECCEQE VKAEVETRSS GPILISHSPF EKQMSKLYTN DIFKKFQAEV SGTLSCTPEK  240
EGEDEETIVY RVYDLERKQS FTVSWSKGIY GIYCLCRLFE YSGFLCRHSL SVLQLSSIST  300
IPSNYILKRW TRAAKIIDIP QASASTNFRV QRLNDICKLS IKVGEEGSIS EEAYKVAYHA  360
LEEAMEHCAR LNYSAKSILE TTKTAAHGLL DVGQNKDKSI AKASKTKVPK KRKVRAEPET  420
VLSTGMEESS QDVEQLNRQS HRLHDSYISQ QDFQGVEPEL RNPIVNGYSG AEHGGPGHLS  480
SLSSLQDCYY NDQSLMQGVL GNFSARVSHH ATQQNLHALL QGQFSFRPLS LEGCSQLRDS  540
LQNENSVSMM SKHLHD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	406	412	KVPKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093711.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X2
Refseq	XP_020553553.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X2
TrEMBL	A0A4D8YIS8	0.0	A0A4D8YIS8_SALSN; Uncharacterized protein
STRING	Migut.J00594.1.p	1e-162	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-81	far-red elongated hypocotyls 3