PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006393-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 748aa    MW: 83952.2 Da    PI: 4.8146
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006393-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.11.4e-1063757451373
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++lL++cA+ v+++d + a + L+++ +++sp+gd  qRla++f+ +L+arl ++++ely++l+ ++ +    +e+l+a++++  ++
  SMil_00006393-RA_Salv 375 LRTLLISCAQSVAADDRRTAYEQLKQIMQHSSPTGDVYQRLAHVFASGLQARLGGTGTELYASLNRRKIT---AAEKLKAYQVYLSAC 459
                            6789*************************************************************99999...9************** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P+ k+s   aN++I+  +++++++HiiDf+i +G+QWp L+q+L++R++g+ +lRiTg++ p++g   +e leetg+rLak++e++gv
  SMil_00006393-RA_Salv 460 PFKKLSIAYANKMIYSLASEATTLHIIDFGILYGFQWPILIQQLSDRASGTFKLRITGIELPQPGfrPAELLEETGSRLAKYCERFGV 547
                            ****************************************************************9*99******************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfe+++++++++e++++e+L++ +gE++aVn+ ++  rllde+v ++s+rd+vL+l+++++P+++v +  + + n++ F++rf eal 
  SMil_00006393-RA_Salv 548 PFEYQAIATQNWEAIKIEDLKIASGEVIAVNSLFRFGRLLDETVMVDSPRDAVLDLIRKIKPHIFVNTVTNGSFNAPFFVTRFREALF 635
                            *******999****************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            +ysalfd+++a+lpr++ +ri  E+ +lgre+ nvvacegaer+er et+++W+ r  +aGFkp+pl++ + k++++    +++d + 
  SMil_00006393-RA_Salv 636 HYSALFDMFDATLPRDNPHRIDFEQDFLGREVINVVACEGAERVERPETYKQWQVRHIRAGFKPLPLDHGILKKIRHKCCGYHKD-FL 722
                            ***********************************************************************************77.** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                             +e+  ++++gWk+r   + S+W
  SMil_00006393-RA_Salv 723 FDEDGFWMLQGWKGRITCASSCW 745
                            *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.231349727IPR005202Transcription factor GRAS
PfamPF035145.0E-104375745IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MDPWFSDSNT SNEFKFDDGS FLPSYDQLQN LRNGTKHDYL DLDVLDIPFL PISPGPDNFG  60
PSSNVSYETD SPDDVDSDPV LKFLNQILVE EDMEEKPSMF HDPLALRAAE KSLYEVIGQK  120
YPPSPSYPGS YVDQKSDSPD SFFGNSSEYT SSSNAGSSSI DPQWIVDPGE NTSSMEQGHL  180
QDLLSDSFLP VSSQSSSLAV NSSYGNVNTQ MNSFSDASLL QNLFGDSESI LQFKRGMEEA  240
SKFLPNSNPL IIDLDKYELP KKSEDISPAV VIKTEIEEPH NSSNSLKGRK HQHTDDGNLE  300
DMERSSKQFA TYVEEVELSE MFDRVLLCTD VKKECGNDDT ELAGPAPLPA VLPNGSNGRK  360
ARAKKNERQG DSVDLRTLLI SCAQSVAADD RRTAYEQLKQ IMQHSSPTGD VYQRLAHVFA  420
SGLQARLGGT GTELYASLNR RKITAAEKLK AYQVYLSACP FKKLSIAYAN KMIYSLASEA  480
TTLHIIDFGI LYGFQWPILI QQLSDRASGT FKLRITGIEL PQPGFRPAEL LEETGSRLAK  540
YCERFGVPFE YQAIATQNWE AIKIEDLKIA SGEVIAVNSL FRFGRLLDET VMVDSPRDAV  600
LDLIRKIKPH IFVNTVTNGS FNAPFFVTRF REALFHYSAL FDMFDATLPR DNPHRIDFEQ  660
DFLGREVINV VACEGAERVE RPETYKQWQV RHIRAGFKPL PLDHGILKKI RHKCCGYHKD  720
FLFDEDGFWM LQGWKGRITC ASSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-423797048330GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089502.10.0scarecrow-like protein 14
RefseqXP_020552354.10.0scarecrow-like protein 14
RefseqXP_020552355.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A291I3020.0A0A291I302_SALMI; GRAS3 transcription factor
STRINGMigut.D02079.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]