PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006314-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Nin-like
Protein Properties Length: 818aa    MW: 90352.8 Da    PI: 5.9886
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006314-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.46.8e-29497548152
                 RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            aek+i+le+l+++F++++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rkik++
  SMil_00006314-RA_Salv 497 AEKTITLEVLRQHFAGSLKDAARNLGVCPTTLKRICRQNGIQRWPSRKIKKV 548
                            589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.677487568IPR003035RWP-RK domain
PfamPF020429.3E-26500548IPR003035RWP-RK domain
SuperFamilySSF542771.37E-21714798No hitNo description
SMARTSM006661.7E-23719803IPR000270PB1 domain
PROSITE profilePS5174522.09719802IPR000270PB1 domain
PfamPF005641.3E-17721797IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.3E-20721797No hitNo description
CDDcd064077.55E-37721797No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MSVAMEEGVL PLSNILSSEA DALDFDYMDE LLLEGCWLEA NGSSEIPHFD CLTPISPFEP  60
SFSWPALDSN NGEPLEEERK RSSFPENLSI SPLVDTSVEG KRWWIGPRAS LSVMERLIHA  120
VGFMKSLSGN KDVLIQVWVP VTRGGRRVLT TNNQPFSLDL NCPKLAHYRE ISVNFLFPAD  180
EDSMEVVGLP GRVYRNKAPE WTPDVRFFSW EDCDCLGVIE VILTKQKIQY RPELESVCKA  240
LEAVDLRSPE LSSTQKAAKA CDLSYQAALP EIIEVLRSAC ETHGLPLAQT WVPCVVQGNR  300
GCWSSDENTK NCVAPVESAC YIGDSRIKGF HEACYEYHLL KGQGIVGTAF QTNEPCFSPD  360
VSACSKADYP LSHHARMFGL KAAVAIRLRS TCTGPADFVL EFFLPTNCNS PDEHRKMLTS  420
VSTIIQNVCT TLRVVTDKEL KEEAAFSKPL AESSEIRLGQ PDSDSKQGVA FVANTSASCH  480
SSSLYMNKTG EKRRIKAEKT ITLEVLRQHF AGSLKDAARN LGVCPTTLKR ICRQNGIQRW  540
PSRKIKKVGH SLQKIQRVID SVQGASADLQ IGSFYSNFPE LASPNASRTT QFSNSTLADD  600
NLNLKPSEAQ PESSVLAPPP TASLSPSSSC SQSSGSSQCC SSGAQPLSVG GQDNASLKDE  660
AANKVLKRTR SDANLHLWND EAKPPPRSHS HVSLSWPDRQ GCALPAGDDN GQKSRERDGP  720
RIKVTYGEDT IRFRMESNWR YKDLLNEISR RFGVDNAGGY HLKYLDDDAE WVLLTCDADL  780
EECVDVCYAT RSQTIRLAFL HDSQSQIARS FSIRGTSL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074088.10.0protein NLP5-like
RefseqXP_011074089.10.0protein NLP5-like
RefseqXP_020548089.10.0protein NLP5-like
RefseqXP_020548090.10.0protein NLP5-like
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A4D9BCU30.0A0A4D9BCU3_SALSN; Uncharacterized protein
STRINGMigut.N02963.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15982467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein