PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006196-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 108aa MW: 11623.2 Da PI: 8.4891 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.8 | 6.5e-37 | 15 | 91 | 1 | 77 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77 +CaaCk+lrr+C ++C++a yfpae+p kf nvhk+FGasnv+kll+++p+++red+++sl+yeAear++dPvyG+v SMil_00006196-RA_Salv 15 PCAACKFLRRRCLSGCIFAAYFPAEEPTKFVNVHKIFGASNVSKLLNEIPPHQREDTVKSLAYEAEARLKDPVYGCV 91 7***************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.29 | 14 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-36 | 15 | 91 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MASSSSSSSS YSSPPCAACK FLRRRCLSGC IFAAYFPAEE PTKFVNVHKI FGASNVSKLL 60 NEIPPHQRED TVKSLAYEAE ARLKDPVYGC VWGPSPFLTP GLHPSAGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-45 | 15 | 91 | 11 | 87 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-45 | 15 | 91 | 11 | 87 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR076528 | 2e-45 | KR076528.1 Boehmeria nivea lateral organ boundaries domain protein (LBD2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597524.1 | 9e-50 | PREDICTED: LOB domain-containing protein 25-like isoform X1 | ||||
Refseq | XP_011097516.1 | 6e-50 | LOB domain-containing protein 25-like | ||||
Refseq | XP_016505823.1 | 9e-50 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_018625398.1 | 9e-50 | PREDICTED: LOB domain-containing protein 25-like isoform X1 | ||||
Refseq | XP_018625399.1 | 9e-50 | PREDICTED: LOB domain-containing protein 25-like isoform X1 | ||||
Swissprot | Q9FML4 | 4e-45 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A1S4CXF4 | 2e-48 | A0A1S4CXF4_TOBAC; LOB domain-containing protein 25-like | ||||
STRING | XP_009597524.1 | 4e-49 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-44 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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