PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006114-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 18561.2 Da PI: 6.8435 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.5e-39 | 12 | 110 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+l+r+C+++C +apyf +++p++f vhk+FGasnv+k+l+++ ee+re+a++slv+eAe+r++dPvyG++g i +lq+++ SMil_00006114-RA_Salv 12 SCAACKFLKRRCTANCQFAPYFRSDEPRRFVKVHKVFGASNVSKILNEVAEEQREEAVNSLVFEAEVRLQDPVYGCIGAIASLQHKMV 99 6*************************************************************************************** PP DUF260 89 qlkaelallke 99 +l+++l l+++ SMil_00006114-RA_Salv 100 ELQHDLILART 110 ****9988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.84 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.2E-39 | 12 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MTKNQEARSS SSCAACKFLK RRCTANCQFA PYFRSDEPRR FVKVHKVFGA SNVSKILNEV 60 AEEQREEAVN SLVFEAEVRL QDPVYGCIGA IASLQHKMVE LQHDLILART RLACYVDHHH 120 QPPPPTFFDD HLDMPPLFPA TPIPDLFDHP TLPLDHFAPL HFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-39 | 9 | 115 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-39 | 9 | 115 | 8 | 114 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076828.2 | 1e-84 | LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 1e-56 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A4D9AD53 | 6e-86 | A0A4D9AD53_SALSN; Uncharacterized protein | ||||
STRING | XP_009786680.1 | 7e-64 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 5e-59 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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