PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006077-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 29909.1 Da PI: 8.7986 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.4e-05 | 57 | 81 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C Cgk+F+ s Lk+H +H SMil_00006077-RA_Salv 57 HVCLehGCGKVFKYLSKLKNHEDSH 81 5777779**************9888 PP | |||||||
2 | zf-C2H2 | 17.8 | 9.3e-06 | 148 | 172 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C+ +Fs+ snL++Hi+ H SMil_00006077-RA_Salv 148 KCSfkGCTLTFSTTSNLHQHIKAvH 172 688999***************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-6 | 49 | 81 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.432 | 57 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 57 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 59 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.6 | 89 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 91 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 9.3 | 117 | 138 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.9E-6 | 128 | 169 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.54E-8 | 128 | 185 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 147 | 177 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.011 | 147 | 172 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 149 | 172 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.1E-4 | 171 | 201 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 22 | 178 | 204 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 180 | 204 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MREAANVTLN GSVPGGGPPE KLHQVCLSHA CYSLRVIWTR HVKEFHDESA STKVKQHVCL 60 EHGCGKVFKY LSKLKNHEDS HVKLDSVEAF CADPGCMKYF SNEQCLKEHI RSCHQHITCD 120 QCGTRQLKKN IKRHMRMHEE GPSSERIKCS FKGCTLTFST TSNLHQHIKA VHLELKPFVC 180 GMPGCHERFA FKHVRNRHEQ TGCHIYTPGN FDESDLQFRS RPRGGRKRKY PVIETLLRKR 240 IVPPSESELV SNDEYENSSW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 220 | 228 | RPRGGRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079244.1 | 1e-124 | transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 4e-88 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A4D8ZUK6 | 1e-144 | A0A4D8ZUK6_SALSN; General transcription factor IIIA | ||||
STRING | Migut.K00168.1.p | 1e-120 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3644 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 4e-91 | transcription factor IIIA |