PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00006039-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 325aa MW: 35715.7 Da PI: 5.8638

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006039-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.7	1.8e-29	38	132	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rWt+qe+l+Li+++r e+r+rrg+ +++p+W+++s++++++g++r+p+qC+++w+nl++++kkike+e++ ++e++s + SMil_00006039-RA_Salv 38 RWTRQEILVLIQGKRVAENRVRRGRasgsafgsgQIEPKWASISSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESRIKEETESYW 125 8********************87777888888************************************************** PP trihelix 80 pyfdqle 86 ++ ++l+ SMil_00006039-RA_Salv 126 VMRNDLR 132 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-5	38	103	IPR009057	Homeodomain-like
Pfam	PF13837	1.0E-11	38	127	No hit	No description
PROSITE profile	PS50090	6.539	38	104	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MALEQLSLGT VAVDGGADGR QPSGDGGDEG GKTVRLPRWT RQEILVLIQG KRVAENRVRR 60 GRASGSAFGS GQIEPKWASI SSYCKRHGVN RGPVQCRKRW SNLAGDFKKI KEWESRIKEE 120 TESYWVMRND LRRERKLPGF FDREVYDILD GGATAGEDVE GLRLALAPGP AAEPVDEEPE 180 ALFDSGRSAA VDDGLFSDFE QSGQEAAPPR TSEQSRETPV KDIPAPTPIS EKQCGSFPQE 240 SPAQEKASGS EGGRKRKRCA SDGESELQHE LIEALEKNGR LLNSQLQAQN THLQLDREQR 300 NGHVNSFITV LNKLADALGR IADKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086880.2	1e-159	LOW QUALITY PROTEIN: trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-122	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A4D9BQB3	0.0	A0A4D9BQB3_SALSN; Uncharacterized protein
STRING	Migut.K01061.1.p	1e-156	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-110	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]