PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006021-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 266aa    MW: 30130.1 Da    PI: 7.6728
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006021-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-161462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd +l++++++ G+g +W + ++++g++R++k+c++rw++yl
  SMil_00006021-RA_Salv 14 KGPWSPEEDAKLKEYIEKNGTGgNWIALPHKVGLRRCGKSCRLRWLNYL 62
                           79*********************************************97 PP
2Myb_DNA-binding37.74.6e-1269111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  SMil_00006021-RA_Salv  69 GEFSDDEDRIICTLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                            789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.705966IPR017930Myb domain
SuperFamilySSF466891.42E-2611109IPR009057Homeodomain-like
SMARTSM007179.0E-131364IPR001005SANT/Myb domain
PfamPF002491.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-241569IPR009057Homeodomain-like
CDDcd001672.48E-91662No hitNo description
SMARTSM007176.9E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129416.64167117IPR017930Myb domain
PfamPF002497.1E-1169111IPR001005SANT/Myb domain
CDDcd001674.06E-870113No hitNo description
Gene3DG3DSA:1.10.10.607.7E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KNGTGGNWIA LPHKVGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC TLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFNN  120
MANNQPNLPS STPPFLQPAP PLCDNVLVFG GGDQGTNQIG HQSFCYFGDD QNQQFFFNDA  180
CSASSSSSPS ANYGCFNDNP QDYYASIEEI KELITSVNAN DGLSFLMDEI KTEEKVWCND  240
HKIFKMHIFM EIGAHHFSLK SRKILY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593620.0KF059362.1 Salvia miltiorrhiza MYB-related transcription factor (MYB8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920665.11e-87transcription factor RAX2 isoform X2
TrEMBLA0A059PSK50.0A0A059PSK5_SALMI; MYB-related transcription factor
STRINGSolyc09g008250.2.11e-81(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.11e-76myb domain protein 68