PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006017-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 418aa    MW: 47769.2 Da    PI: 6.3554
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006017-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind90.71.8e-28781991102
                            HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.............. CS
           HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.............. 74 
                            aFl+k++e+++d+e++++isws +++sfvv+d+++f+ ++Lpk+Fkh+nf+SFvRQLn Y    ++  +  +++              
  SMil_00006017-RA_Salv  78 AFLRKTFEMVDDAETDSIISWSFTKDSFVVWDPHRFSADLLPKHFKHNNFSSFVRQLNSYSVPVSSILKLLEADfhpillgiaadlps 165
                            69********************888************************************999998888766699999999999888 PP

                            ......XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
           HSF_DNA-bind  75 ......kekiweFkhksFkkgkkellekikrkks 102
                                  +++  eF+ + Fk+gkk+ll++i r++ 
  SMil_00006017-RA_Salv 166 frfkkiDPDRYEFASEGFKQGKKHLLKHITRRTY 199
                            877654499**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.16E-2775197IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.5E-3275197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-3975197IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-2579197IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-1379102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-13117129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-13130142IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
LLYKSTHKVK VGWGMIKMGE NGINTVGEEG FGFKEELLVR VKEEEEESFM FSAEEEDDQN  60
QPPKAMPMEG LREHGPPAFL RKTFEMVDDA ETDSIISWSF TKDSFVVWDP HRFSADLLPK  120
HFKHNNFSSF VRQLNSYSVP VSSILKLLEA DFHPILLGIA ADLPSFRFKK IDPDRYEFAS  180
EGFKQGKKHL LKHITRRTYK SDSLQQKGAP DSTDHGVGAE LEKLRNDHCA LRAEIWKMRQ  240
QNESSMHDMA AVRERLRATE TKQKHMVVFM MKSLRNPMFL QYLVERVEKR RALSSGMSKK  300
RRRVACEDVG GHCSVEEGAE MQAFSWDESG STTAETDICS ENVMLWEKLM EDEVICEEES  360
DVARDVEGKI CAAMAKRTKP TSNTMIAEVM APDECLHRFY ACGAYYGWSG RGRNAGHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A7e-18751973106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A7e-18751973106HEAT-SHOCK TRANSCRIPTION FACTOR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288302KRRALSSGMSKKRRR
2299303KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D8YN961e-124A0A4D8YN96_SALSN; Heat shock transcription factor, other eukaryote
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-64heat shock transcription factor A2