PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005972-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 329aa    MW: 37158.9 Da    PI: 8.3998
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005972-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.37e-15247272126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +ktelC+ + +tG C+yG++C+FaHg
  SMil_00005972-RA_Salv 247 FKTELCNKWEETGACPYGENCQFAHG 272
                            79***********************8 PP
2zf-CCCH20.58.7e-07285310126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            ykte Cr  +++  C+yG rC+F H+
  SMil_00005972-RA_Salv 285 YKTEVCRMVLAGDACPYGHRCHFRHS 310
                            9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.7E-19242279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-11243278IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9246273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817246274IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-12247272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-8280314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-12280313IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5284311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188284312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
LRLREFSGAM QKENTSFSVL TTTSAADAAP HCFSRSNFFL SPNSRTDYLN SDASLYSSLF  60
QKYTTDAASF DGGDAERRCH DSSSILEYQQ LYNRYTLCIS RLRDSIEEVD ALRRDNESLR  120
VSNADLSRRV ALLFSRERLL SEFNRLGVAS PTAAAPVSVP VPVHVPAPQP LAECNRFERR  180
NPEKTVLPKS ISVRSKGYLK MMNRSGREPS IQKTVSQPSP PSQRVYVPGA KEEEDALEFD  240
VYNQGMFKTE LCNKWEETGA CPYGENCQFA HGIKELRPVI RHPRYKTEVC RMVLAGDACP  300
YGHRCHFRHS LTEEEKLMAA GPLRPPPPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-22247313470Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100111.11e-161zinc finger CCCH domain-containing protein 14
TrEMBLA0A4D8YGB50.0A0A4D8YGB5_SALSN; Butyrate response factor 1
STRINGMigut.H00243.1.p1e-141(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-69C3H family protein