PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005971-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NF-YC | ||||||||
Protein Properties | Length: 151aa MW: 17217.2 Da PI: 6.5037 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 68.5 | 1.1e-21 | 1 | 63 | 38 | 99 |
NF-YC 38 misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprd 99 mis ++P+l+ kace+f++el++r+w+h++ n+r+t++++d+a a+ ++ fl d+vp + SMil_00005971-RA_Salv 1 MISGDTPALFGKACEIFVMELSVRAWMHTQLNNRKTVQRNDVAYAIRDdATLLAFLDDVVPLE 63 8*********************************************86256789******977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-16 | 1 | 61 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.75E-13 | 1 | 61 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.0E-8 | 2 | 46 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MISGDTPALF GKACEIFVME LSVRAWMHTQ LNNRKTVQRN DVAYAIRDDA TLLAFLDDVV 60 PLESHHEPQV SINHHHGVYV PHPFTNQSLL EGGGRPDHDH HLPFPINLHH NYNPDAHVHM 120 GRSGGEQHIN HNFPPSYDGT NPYLTFKEFF Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-16 | 1 | 61 | 35 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099518.1 | 3e-35 | nuclear transcription factor Y subunit C-3-like isoform X1 | ||||
Refseq | XP_011099519.1 | 3e-35 | nuclear transcription factor Y subunit C-3-like isoform X1 | ||||
TrEMBL | A0A4D8Z362 | 5e-29 | A0A4D8Z362_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17621 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 1e-19 | nuclear factor Y, subunit C4 |