PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005963-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GRAS | ||||||||
Protein Properties | Length: 527aa MW: 58587.1 Da PI: 4.9657 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 425.1 | 5.6e-130 | 159 | 527 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 +lL+ecA a+++g+ ++a++++ l++++s +g+p R+aay++eAL ar+a s+ +lykal++++ + ss++l+a+++++e++P+ SMil_00005963-RA_Salv 159 SLLFECAAAIQNGNCHEASQMIDVLRQRVSIQGEPSDRIAAYMVEALVARMATSGRGLYKALKCKSPP---SSDRLSAMQVLFEACPC 243 79*****************************************************************9...9**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176 ++f++++aN aIle eervHiiDfdi+qG Q+ +Ll++La+ +++ p++R+Tgv++pes+ l+ +gerL+++A+ l+++f SMil_00005963-RA_Salv 244 FRFGFMAANGAILETCRDEERVHIIDFDINQGSQYYTLLKTLAETRGQRPHVRLTGVDDPESVqrGVGGLNIIGERLEQLAKDLQLSF 331 *************************************************************99888899******************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264 ef++ va +++ ++++ L +++gEal+Vn+++qlh+l+desvs+++ rd++L++vksl+Pk+v++veq++++n+++Fl rf+ea +yy SMil_00005963-RA_Salv 332 EFHA-VAAETALVSPSLLGCRQGEALVVNFAFQLHHLPDESVSTTNLRDQLLRMVKSLKPKLVTLVEQDVNTNTSPFLLRFAEAYNYY 418 ****.7999******************************************************************************* PP GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352 sa+f sl+a+l+r++++ri+vE+++l+r+i nvvaceg+er+er e ++kW++r+++aGF+p p+s +++ +++ l+r+++++ y+v+ SMil_00005963-RA_Salv 419 SAVFASLDATLGRNNQDRINVEKHCLARDIINVVACEGEERIERYEVAGKWKARMSMAGFNPRPISGNVYVEIQKLIRQYSDR-YKVK 505 *********************************************************************************66.**** PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 ee g+l +gW+d+ L+ SaWr SMil_00005963-RA_Salv 506 EETGTLHFGWEDKMLILSSAWR 527 *********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.153 | 131 | 508 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-127 | 159 | 527 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MPLVTSAANL GSHERYTVKD GDNTSETSIS MFGSDATCTS QSSSGDSYGQ KYLLDSPLVT 60 SRQDIGEFDY ELDGQSLDMA GYDSDKMKLK LQELEKVLLD DNAANDDCQN MEIEGGLSDT 120 TCYALIHDSP KESSSSNSIR SIISTTRELS FTTTPTPKSL LFECAAAIQN GNCHEASQMI 180 DVLRQRVSIQ GEPSDRIAAY MVEALVARMA TSGRGLYKAL KCKSPPSSDR LSAMQVLFEA 240 CPCFRFGFMA ANGAILETCR DEERVHIIDF DINQGSQYYT LLKTLAETRG QRPHVRLTGV 300 DDPESVQRGV GGLNIIGERL EQLAKDLQLS FEFHAVAAET ALVSPSLLGC RQGEALVVNF 360 AFQLHHLPDE SVSTTNLRDQ LLRMVKSLKP KLVTLVEQDV NTNTSPFLLR FAEAYNYYSA 420 VFASLDATLG RNNQDRINVE KHCLARDIIN VVACEGEERI ERYEVAGKWK ARMSMAGFNP 480 RPISGNVYVE IQKLIRQYSD RYKVKEETGT LHFGWEDKML ILSSAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-59 | 163 | 526 | 24 | 377 | Protein SCARECROW |
5b3h_D | 3e-59 | 163 | 526 | 24 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101883.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_011101887.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_011101891.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_011101898.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_020547813.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A4D9BXG4 | 0.0 | A0A4D9BXG4_SALSN; Uncharacterized protein | ||||
STRING | Migut.C01100.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8967 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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