PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00005944-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 394aa MW: 43614.7 Da PI: 6.7086

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00005944-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.3e-11	323	367	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++Er+RR ri + + +L++l P+ +k + a++L +Av+YIk+L SMil_00005944-RA_Salv 323 SIAERNRRTRISKNMKKLQDLFPNM----DKQTNTADMLDLAVDYIKEL 367 689*******************7....688*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.037	317	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-13	320	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.15E-10	321	370	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.4E-13	322	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-8	323	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.1E-9	323	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MFSSDTISRD FLHSNANPSH HTNFKHVSAD AEFSKSREFM PSDFFNNQHQ HSSGLARYRS 60 APSSLFAALL DSNTDNNSSS GDESDAFFSA LIERDLNPKS SDHQISSGMK REDGAEADPR 120 PAQNGYDAVT GSYSVGMVHH VDVRLRDENG NRSNLLRQSS SPAGFFNGFG VMGEAGDYRV 180 HNPAEDSSSV GGLSSSMNLT SAASSSSRFM PSIPETGNQD AFSPENGRLR NEPTFQHDSW 240 NETSFNSLKR NRDGDSKMFS NFNGLDNENG EARKKSSGLV SHFSLPKTST EMAAVENFLQ 300 FQQETTVPCQ VRAKRGFATH PRSIAERNRR TRISKNMKKL QDLFPNMDKQ TNTADMLDLA 360 VDYIKELKKE MQMLNDARAR CVCSGTPQQT SPTT

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MFSSDTISRD FLHSNANPSH HTNFKHVSAD AEFSKSREFM PSDFFNNQHQ HSSGLARYRS  60
APSSLFAALL DSNTDNNSSS GDESDAFFSA LIERDLNPKS SDHQISSGMK REDGAEADPR  120
PAQNGYDAVT GSYSVGMVHH VDVRLRDENG NRSNLLRQSS SPAGFFNGFG VMGEAGDYRV  180
HNPAEDSSSV GGLSSSMNLT SAASSSSRFM PSIPETGNQD AFSPENGRLR NEPTFQHDSW  240
NETSFNSLKR NRDGDSKMFS NFNGLDNENG EARKKSSGLV SHFSLPKTST EMAAVENFLQ  300
FQQETTVPCQ VRAKRGFATH PRSIAERNRR TRISKNMKKL QDLFPNMDKQ TNTADMLDLA  360
VDYIKELKKE MQMLNDARAR CVCSGTPQQT SPTT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257493	0.0	KP257493.1 Salvia miltiorrhiza clone 60 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087339.1	1e-153	transcription factor bHLH130
TrEMBL	A0A0H3Y8V8	0.0	A0A0H3Y8V8_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.B01333.1.p	1e-125	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-55	bHLH family protein